Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0867
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)                34   0.12 
SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)                     28   5.8  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)
          Length = 385

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQ 500
           M+T  AN P   LRQ + D+IW DL+EGI+ V  +Q
Sbjct: 63  MATRGAN-PH-GLRQINLDEIWDDLKEGIQHVYNQQ 96


>SB_24433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 281 FCNGISNRIDTIFSEYI*LIQKINYCLN 364
           F NG+ N+++  FSE+I ++Q+I    N
Sbjct: 239 FLNGVLNQLNWAFSEFIGMLQEIQQATN 266


>SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)
          Length = 406

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 497 FFXNLFDSLLKIAPYLIKVLLPQRHLGSVGITS 399
           +F N F SL  IA YL  + L + HL ++ ITS
Sbjct: 323 YFVNCFYSLFYIAFYLQDIALLRTHLAALMITS 355


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 322  TENRIDPITNSVTKCNAIKLNNDRNHSVGSDYFT 221
            TE+ ++  TN   K + I+  ND     GSDY T
Sbjct: 1880 TESTLEDTTNDEKKDDTIETKNDAQPRKGSDYST 1913


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,402,793
Number of Sequences: 59808
Number of extensions: 310045
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)