Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0867
         (655 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.               36   0.13 
BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein pr...    36   0.13 
BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.             36   0.13 
BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.             36   0.13 
AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.             36   0.13 
AC005229-1|AAM49153.1|  263|Homo sapiens cullin 1 protein.             36   0.13 
M36676-1|AAA35548.1|  347|Homo sapiens apolipoprotein B100 protein.    31   4.7  
AC115619-1|AAX93246.1|  633|Homo sapiens unknown protein.              31   4.7  
AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B  varia...    31   4.7  

>U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.
          Length = 752

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           MS++ +  P   L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein
           protein.
          Length = 776

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           MS++ +  P   L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           MS++ +  P   L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           MS++ +  P   L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           MS++ +  P   L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>AC005229-1|AAM49153.1|  263|Homo sapiens cullin 1 protein.
          Length = 263

 Score = 35.9 bits (79), Expect = 0.13
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 393 MSTSNANRPQVPLRQKDFDQIWGDLQEGIEQVXKKQYMVR 512
           MS++ +  P   L+Q   DQIW DL+ GI+QV  +Q M +
Sbjct: 1   MSSTRSQNPH-GLKQIGLDQIWDDLRAGIQQVYTRQSMAK 39


>M36676-1|AAA35548.1|  347|Homo sapiens apolipoprotein B100 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 287 NGISNRIDTIFSEYI*LIQKI---NYCLNVYLYTFYVNYE 397
           N I + I+TIFS+YI  + K+   N CLN++ +  ++  E
Sbjct: 111 NYIQDEINTIFSDYIPYVFKLLKENLCLNLHKFNEFIQNE 150


>AC115619-1|AAX93246.1|  633|Homo sapiens unknown protein.
          Length = 633

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 287 NGISNRIDTIFSEYI*LIQKI---NYCLNVYLYTFYVNYE 397
           N I + I+TIFS+YI  + K+   N CLN++ +  ++  E
Sbjct: 397 NYIQDEINTIFSDYIPYVFKLLKENLCLNLHKFNEFIQNE 436


>AB208846-1|BAD92083.1| 1615|Homo sapiens Apolipoprotein B  variant
            protein.
          Length = 1615

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 287  NGISNRIDTIFSEYI*LIQKI---NYCLNVYLYTFYVNYE 397
            N I + I+TIFS+YI  + K+   N CLN++ +  ++  E
Sbjct: 1379 NYIQDEINTIFSDYIPYVFKLLKENLCLNLHKFNEFIQNE 1418


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,451,580
Number of Sequences: 237096
Number of extensions: 1423351
Number of successful extensions: 6062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6062
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)