Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0867
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 382 KRVQINVETVIDFLY*LNIFTENRIDP 302
           KR+ ++  T I  +Y  NI T+N++ P
Sbjct: 23  KRIYLSPRTPIKNVYKNNIETKNQLSP 49


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 571 YDDEPTYNXVYVSI 530
           YDDE TYN +  ++
Sbjct: 43  YDDEITYNIISAAV 56


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 376 VQINVETVIDFLY*LNIFTENRID 305
           +++ VE+VI+F   L+ FT+  I+
Sbjct: 200 IKVQVESVIEFEPGLDSFTQQLIE 223


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 571 YDDEPTYNXVYVSI 530
           YDDE TYN +  ++
Sbjct: 43  YDDEITYNIISAAV 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,908
Number of Sequences: 438
Number of extensions: 2866
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)