Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0867
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44460.1 68416.m04779 basic leucine zipper transcription fact...    28   6.2  
At3g13500.1 68416.m01698 hypothetical protein                          27   8.2  
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containi...    27   8.2  
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containi...    27   8.2  
At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containi...    27   8.2  

>At3g44460.1 68416.m04779 basic leucine zipper transcription factor
           (BZIP67) identical to basic leucine zipper transcription
           factor GI:18656053 from [Arabidopsis thaliana];
           identical to cDNA basic leucine zipper transcription
           factor (atbzip67 gene) GI:18656052
          Length = 331

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 423 VPLRQKDFDQIWGDLQEGIEQ 485
           VPL +K  D++W ++Q G++Q
Sbjct: 103 VPLCKKTVDEVWLEIQNGVQQ 123


>At3g13500.1 68416.m01698 hypothetical protein
          Length = 110

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 613 FLCYFEALCWSYRRYDDEPTYNXV 542
           F+C +E LC+S   YD +  Y+ V
Sbjct: 42  FICLWEFLCFSVSDYDSDDDYDYV 65


>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 731

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 379 RVQINVETVIDFLY*LNIFTENRIDPITNSVTKCNAIKLNNDRNHSVGSDY 227
           R +I+ ET   F    N+F  N ++    SV   NA++    R + + +DY
Sbjct: 63  RKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDY 113


>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 731

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 379 RVQINVETVIDFLY*LNIFTENRIDPITNSVTKCNAIKLNNDRNHSVGSDY 227
           R +I+ ET   F    N+F  N ++    SV   NA++    R + + +DY
Sbjct: 63  RKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDY 113


>At1g72320.1 68414.m08363 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (5 copies)
          Length = 753

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 379 RVQINVETVIDFLY*LNIFTENRIDPITNSVTKCNAIKLNNDRNHSVGSDY 227
           R +I+ ET   F    N+F  N ++    SV   NA++    R + + +DY
Sbjct: 85  RKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDY 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,077,799
Number of Sequences: 28952
Number of extensions: 214690
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)