Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0866
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 49 6e-07
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 43 6e-05
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 31 0.14
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 29 0.56
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 28 1.3
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 5.2
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 5.2
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.9
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 9.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 49.2 bits (112), Expect = 6e-07
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIIS 144
MREIVH+QAGQCGNQ+GA FW I+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIA 25
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLE 205
HG+D G YHG S+ Q E
Sbjct: 28 HGLDSAGIYHGTSEAQHE 45
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 42.7 bits (96), Expect = 6e-05
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +1
Query: 73 REIVHLQAGQCGNQIGAKFWE 135
REI+ LQAGQCGNQIG++FW+
Sbjct: 3 REIITLQAGQCGNQIGSQFWQ 23
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 31.5 bits (68), Expect = 0.14
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEI 138
MREI+ + GQ G QIG WE+
Sbjct: 1 MREIISIHVGQAGTQIGNACWEL 23
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 29.5 bits (63), Expect = 0.56
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEI 138
MRE++ + GQ G QIG WE+
Sbjct: 1 MREVISVHVGQAGVQIGNACWEL 23
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 544 RWAGNPGSGYGATPALHSSKDSRXKSNPPEQKFMETTLTSVSSPLSAPK 690
R N + Y +PAL SK + KSN +K TS SS ++ PK
Sbjct: 269 RTVSNSETSYVGSPALKQSKPNSLKSNNTSRK------TSASSAITKPK 311
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 53 KITYTK*GKSFIYRPANVV 109
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +1
Query: 559 PGSGYGATPALHSSKDSRXKSNPPEQKFMETTLTSVSSPLSAPKKLFRNNLVRSKP-LNK 735
P S P + SS N F L + S P+ + +NN++ +KP LN
Sbjct: 316 PVSNLPLNPPIQSSNSRLSHDNNSFDPFAYLGLDPKNPSASFPRVVSQNNMLTNKPVLNN 375
Query: 736 WRTSSQVSTRLK 771
S S LK
Sbjct: 376 HFQQSMYSNLLK 387
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 568 GYGATPALHSSKDSRXKSNPPEQKFMETTLTSVSSPLSAPKKLFRN 705
GY TP + R EQKFME +++V LS +LF N
Sbjct: 162 GYLGTPRSRFHDNRRWN----EQKFMELAVSAVEEQLSNGIQLFSN 203
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 9.2
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +1
Query: 457 SCDVSPAKNSEFLAIGXTGGFPNLT-TFPLRWAGNPGSGYGATPALHSSKDSRXKS-NPP 630
+ D+S S G G P T + PL+ AG PG G +L K+ S N P
Sbjct: 479 TADISQNTESGSSTQGQMFGIPPTTQSIPLKMAGFPG---GVNSSLTDIKEEEAVSENAP 535
Query: 631 EQKFMETTLTSVSSPLS-APKKLFRNNLVRSKPL 729
+Q+ E + + + + AP+ + +S PL
Sbjct: 536 QQE--ERSFEQIKTSIHIAPENISAIEESKSVPL 567
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,837
Number of Sequences: 5004
Number of extensions: 66771
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -