Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0866
(777 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 64 2e-10
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 59 5e-09
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 5e-09
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 58 6e-09
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 32 0.45
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 31 0.79
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 30 2.4
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 30 2.4
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 29 3.2
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 29 3.2
SB_4671| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 29 4.2
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06) 29 4.2
SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6) 28 7.3
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 28 7.3
SB_1105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0) 28 7.3
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 28 9.7
SB_28645| Best HMM Match : TIL (HMM E-Value=4.8) 28 9.7
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 63.7 bits (148), Expect = 2e-10
Identities = 45/103 (43%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Frame = +1
Query: 61 LYKMREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYTNNEASG 240
L+KMREIVH QAGQCGNQIGAKFWE+IS P L + ++Y NEA+G
Sbjct: 211 LFKMREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVY-YNEATG 269
Query: 241 GQVTCPGGHPRS---NLEPGHHGTSVPASGTFSDRFFPSGTNF 360
G+ PR+ +LEPG + SG F F P F
Sbjct: 270 GKYV-----PRAVLVDLEPGTMDS--VRSGPFGQIFRPDNFVF 305
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 58.8 bits (136), Expect = 5e-09
Identities = 43/100 (43%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYTNNEASGGQV 249
MREIVH QAGQCGNQIGAKFWE+IS P L + ++Y NEA+GG+
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVY-YNEATGGKY 59
Query: 250 TCPGGHPRS---NLEPGHHGTSVPASGTFSDRFFPSGTNF 360
PR+ +LEPG + SG F F P F
Sbjct: 60 V-----PRAILVDLEPGTMDS--VRSGPFGQIFRPDNFVF 92
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 58.8 bits (136), Expect = 5e-09
Identities = 43/100 (43%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYTNNEASGGQV 249
MREIVH QAGQCGNQIGAKFWE+IS P L + ++Y NEA+GG+
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVY-YNEATGGKY 59
Query: 250 TCPGGHPRS---NLEPGHHGTSVPASGTFSDRFFPSGTNF 360
PR+ +LEPG + SG F F P F
Sbjct: 60 V-----PRAILVDLEPGTMDS--VRSGPFGQIFRPDNFVF 92
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 58.4 bits (135), Expect = 6e-09
Identities = 44/100 (44%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYTNNEASGGQV 249
MREIV LQAGQCGNQIGAKFWE+IS P L + ++Y NEA+GG+
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVY-YNEATGGKY 59
Query: 250 TCPGGHPRS---NLEPGHHGTSVPASGTFSDRFFPSGTNF 360
PRS +LEPG + SG F F P F
Sbjct: 60 V-----PRSVLIDLEPGTMDS--VRSGPFGQIFRPDNFVF 92
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 79 IVHLQAGQCGNQIGAKFWEII 141
IV LQ GQCGNQIG + +++I
Sbjct: 3 IVTLQLGQCGNQIGRELFDLI 23
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 32.3 bits (70), Expect = 0.45
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYTNNEASGG 243
MRE + + GQ G QIG WE+ +P +P + GD S T +GG
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGG 58
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 64 YKMREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
Y+ RE + + GQ G QIG WE+ +P +P + GD S T
Sbjct: 432 YEERECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 484
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G QIG WE+ +P +P + GD S T
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 51
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 64 YKMREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
Y+ RE V + GQ G Q+G WE+ +P +P + GD S T
Sbjct: 417 YEERECVSIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 469
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/94 (26%), Positives = 38/94 (40%)
Frame = +1
Query: 64 YKMREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYTNNEASGG 243
Y+ RE + + GQ G Q+G WE+ +P +P + GD S T +G
Sbjct: 803 YEERECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 862
Query: 244 QVTCPGGHPRSNLEPGHHGTSVPASGTFSDRFFP 345
P ++LEP +GT+ F P
Sbjct: 863 GKHVPRA-VFADLEP--TVVDEVRTGTYRQLFHP 893
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 73 REIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
RE + + GQ G QIG WE+ +P +P + GD + T
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNT 422
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Frame = +1
Query: 88 LQAGQCGNQIGAKFWEIISXRARHRP--HRCLPWGL*LAVGDASMYTNNEASGG------ 243
L GQCGNQIG + ++ + +P HR ++ + +N S G
Sbjct: 6 LPVGQCGNQIGHELMTLVEKQCEGKPLSHRDGKLRCVCVDSESKVIASNRRSDGVHGQNR 65
Query: 244 -QVTCPGGHPR-SNLEPGHHGTSVPASGT 324
G R +N G+HG S+ GT
Sbjct: 66 DSNIIAGRRGRGNNFALGYHGNSIDEGGT 94
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G Q+G WE+ +P +P + GD S T
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 51
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G QIG WE+ +P +P GD S T
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTQGGGDDSFNT 51
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G Q+G WE+ +P +P + GD S T
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 51
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
+RE + + GQ G QIG WE+ +P +P + GD S T
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 636
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 61 LYKMREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
L RE + + GQ G QIG WE+ +P +P + GD S T
Sbjct: 62 LILQRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 115
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 73 REIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
RE + + GQ G QIG WE+ +P +P + GD S T
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 563
>SB_4671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 535 FPLRWAGNPGSGYGATPALHSSKDSRXKSNPPEQK 639
F +W +P GYG P K+++ K PP QK
Sbjct: 213 FSGQW-DDPTVGYGVKPKRRQKKEAKGKGAPPRQK 246
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 73 REIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
RE + + GQ G QIG WE+ +P +P + GD S T
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNT 50
>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
Length = 618
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 256 PGGHPRSNLEP-GHHGTSVPASGTFSDRFFPSG 351
P G+P+ P G+H + SG R++PSG
Sbjct: 542 PSGNPQPRYYPSGNHSPGITPSGNPQPRYYPSG 574
>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
Length = 774
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 521 GKPPVXPIAKNSEFFAGLTSQEPKFNEASATLCC*LFPWPQFVCPAXRNCSERR--KFVP 348
G+ V + NS+ + L +E + SA + P Q A RNC E+R + +
Sbjct: 485 GRNSVAVVLGNSDIYEPLDKKERSASAPSAVVLRRAKPRRQDSMEAKRNCDEKRLSRALT 544
Query: 347 DGKNLS 330
D +NLS
Sbjct: 545 DPQNLS 550
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 58 NLYKMREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLP 180
++ MRE + + GQ G QIG WE+ +P +P
Sbjct: 192 SIQTMRECLSIHVGQAGVQIGNACWELYCLEHGIQPDGHMP 232
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 637 SAPGGYSXHGNLLKNXXQGLPHNRTPGCPPTEGE 536
SAP G S H NLL N Q P+ P P +G+
Sbjct: 407 SAPRGGSQHQNLLYNAPQIQPYQGHPQGYPPQGD 440
>SB_1105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 378 ELFRKTKVCSGRKESVRKGSRSRYRSSMVPGLQ 280
E F KT SGR + KG++S+ RSS GLQ
Sbjct: 363 EYFYKTSKMSGRGKGKAKGTKSKTRSSRA-GLQ 394
>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 945
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 256 PGGHPRSNLEPGHHGTSVPASGTFSDRFF 342
P S + GHHGT + G+ DRFF
Sbjct: 141 PAKTTESPSKHGHHGTGMQRKGSQKDRFF 169
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 268 PRSNLEPGHHGTSVPASGTFSDRFFPSGTNFRLSEQF 378
P+S P HHG+S P +G F SG +SEQF
Sbjct: 901 PQSIASPRHHGSSSPLNG------FDSGHIAAMSEQF 931
>SB_28645| Best HMM Match : TIL (HMM E-Value=4.8)
Length = 161
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 88 LQAGQCGNQIGAKFWEIIS-XRARHRPHRCLPWGL 189
++ G+C ++IG W + S H C P+GL
Sbjct: 6 VERGRCSDEIGLLGWSLTSIAHGASERHNCRPYGL 40
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,929,019
Number of Sequences: 59808
Number of extensions: 539220
Number of successful extensions: 1620
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -