Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0866
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   4.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   4.2  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 170 GAYHGDSDLQLETHQCILT 226
           G YH D DL+   H+  LT
Sbjct: 98  GQYHDDEDLKTFFHKIALT 116


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 347 DGKNLSEKVPEAGTEVPWCPGSKFERGWPPGHVTXP 240
           +GK L+E + E    V + PG K     PP  +  P
Sbjct: 47  NGKKLTEIINETHENVKYLPGHKL----PPNIIAIP 78


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +3

Query: 294 PWNFCTGFWN 323
           PW  C  +WN
Sbjct: 97  PWGSCNNYWN 106


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 271  RSNLEPGHHGTSVPASGTFSDRFFPSGTNFRLS 369
            RSN+ P   G + P       R  P   + RLS
Sbjct: 908  RSNVTPRSPGRAWPGDSDIRQRPIPRSDDIRLS 940


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -2

Query: 485 EFFAGLTSQEPKFNEASATLCC*LFPWPQFV 393
           EFF    ++ P F+       C   PW + V
Sbjct: 311 EFFYCAATKNPNFDRMQGNPICVQIPWDKNV 341


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 595 NXXQGLPHNRTPGCPPTE 542
           N  QG P    PG PP++
Sbjct: 41  NPSQGPPPGGPPGAPPSQ 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,079
Number of Sequences: 438
Number of extensions: 5204
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)