Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0866
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 52 3e-07
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 52 3e-07
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 52 4e-07
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 52 4e-07
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 52 4e-07
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 51 7e-07
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 51 7e-07
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 51 1e-06
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 51 1e-06
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 40 0.002
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 40 0.002
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 33 0.21
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 31 0.64
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 31 0.85
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 31 0.85
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 30 2.0
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 30 2.0
At4g37190.1 68417.m05265 expressed protein 29 2.6
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 29 3.4
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 29 3.4
At5g56530.1 68418.m07055 expressed protein contains similarity t... 29 4.5
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 4.5
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 4.5
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 29 4.5
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 29 4.5
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 28 6.0
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con... 28 7.9
At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C... 28 7.9
At1g31800.1 68414.m03903 cytochrome P450 family protein similar ... 28 7.9
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIGAKFWE+I
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVI 24
Score = 32.7 bits (71), Expect = 0.28
Identities = 29/75 (38%), Positives = 33/75 (44%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLETHQCILTMXXXXXXXXXXXXILVRTWSPGTMELLYRLLEPFR 331
HGID TG Y GDS LQLE I ++ PGTM+ L PF
Sbjct: 28 HGIDHTGQYVGDSPLQLER---IDVYFNEASGGKYVPRAVLMDLEPGTMDSLRS--GPF- 81
Query: 332 TDSFRPEQTFVFRNS 376
FRP+ FVF S
Sbjct: 82 GQIFRPD-NFVFGQS 95
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIGAKFWE+I
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVI 24
Score = 31.5 bits (68), Expect = 0.64
Identities = 28/75 (37%), Positives = 33/75 (44%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLETHQCILTMXXXXXXXXXXXXILVRTWSPGTMELLYRLLEPFR 331
HGID TG GD+DLQLE I ++ PGTM+ L PF
Sbjct: 28 HGIDQTGQSCGDTDLQLER---INVYFNEASGGKYVPRAVLMDLEPGTMDSLRS--GPF- 81
Query: 332 TDSFRPEQTFVFRNS 376
FRP+ FVF S
Sbjct: 82 GQIFRPD-NFVFGQS 95
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIGAKFWE++
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVV 24
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/75 (40%), Positives = 36/75 (48%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLETHQCILTMXXXXXXXXXXXXILVRTWSPGTMELLYRLLEPFR 331
HGIDPTG Y GDSDLQLE I ++ PGTM+ L P+
Sbjct: 28 HGIDPTGRYTGDSDLQLER---INVYYNEASCGRFVPRAVLMDLEPGTMDSLRS--GPY- 81
Query: 332 TDSFRPEQTFVFRNS 376
+FRP+ FVF S
Sbjct: 82 GQTFRPD-NFVFGQS 95
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIGAKFWE++
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVV 24
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/75 (40%), Positives = 36/75 (48%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLETHQCILTMXXXXXXXXXXXXILVRTWSPGTMELLYRLLEPFR 331
HGIDPTG Y GDSDLQLE I ++ PGTM+ L P+
Sbjct: 28 HGIDPTGRYTGDSDLQLER---INVYYNEASCGRFVPRAVLMDLEPGTMDSLRS--GPY- 81
Query: 332 TDSFRPEQTFVFRNS 376
+FRP+ FVF S
Sbjct: 82 GQTFRPD-NFVFGQS 95
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 52.0 bits (119), Expect = 4e-07
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIGAKFWE++
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVV 24
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLE 205
HGID TG Y G++DLQLE
Sbjct: 28 HGIDSTGRYQGENDLQLE 45
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 51.2 bits (117), Expect = 7e-07
Identities = 18/25 (72%), Positives = 24/25 (96%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIIS 144
MREI+H+Q GQCGNQIG+KFWE+++
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVN 25
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLE 205
HGID TG Y GDS+LQLE
Sbjct: 28 HGIDQTGRYVGDSELQLE 45
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 51.2 bits (117), Expect = 7e-07
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIG+KFWE+I
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVI 24
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 152 HGIDPTGAYHGD-SDLQLETHQCILTMXXXXXXXXXXXXILVRTWSPGTMELLYRLLEPF 328
HGID TG Y GD +DLQLE I ++ PGTM+ + PF
Sbjct: 28 HGIDSTGRYSGDTADLQLER---INVYYNEASGGRYVPRAVLMDLEPGTMDSIRS--GPF 82
Query: 329 RTDSFRPEQTFVFRNS 376
FRP+ FVF S
Sbjct: 83 -GQIFRPD-NFVFGQS 96
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 50.8 bits (116), Expect = 1e-06
Identities = 18/24 (75%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIG+KFWE++
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVV 24
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 152 HGIDPTGAYHGDSDLQLE 205
HGIDPTG Y G+SDLQLE
Sbjct: 28 HGIDPTGRYVGNSDLQLE 45
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 50.8 bits (116), Expect = 1e-06
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEII 141
MREI+H+Q GQCGNQIG+KFWE+I
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVI 24
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/19 (78%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
Frame = +2
Query: 152 HGIDPTGAYHGDS-DLQLE 205
HG+DPTG Y+GDS DLQLE
Sbjct: 28 HGVDPTGRYNGDSADLQLE 46
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 73 REIVHLQAGQCGNQIGAKFWE 135
REI+ LQ GQCGNQIG +FW+
Sbjct: 3 REIITLQVGQCGNQIGMEFWK 23
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 73 REIVHLQAGQCGNQIGAKFWE 135
REI+ LQ GQCGNQIG +FW+
Sbjct: 3 REIITLQVGQCGNQIGMEFWK 23
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +1
Query: 469 SPAKNSEFLAIGXTGGFPNLTTFPLRWAGNPGSGYGATPALHSSKDSRXKSNPPEQKFME 648
SP ++ ++G GG + + GN G YG T + +S + S+PP ME
Sbjct: 66 SPTPSNSNFSVGGVGGENVIMRELIGKLGNIGDIYGITASNGNSCYATPMSSPPPGSMME 125
Query: 649 TTLTSVSSPLS 681
T T+ + LS
Sbjct: 126 TKTTTPMAELS 136
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*L-AVGDASMYTNNEASGGQ 246
MREI+ + GQ G Q+G WE+ +P +P + A DA +E S GQ
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLP 180
MREI+ + GQ G Q+G WE+ +P +P
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMP 37
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLP 180
MREI+ + GQ G Q+G WE+ +P +P
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMP 37
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -1
Query: 381 PELFRKTKVCSGRKESVRKGSRSRYRSSMVPGLQVRTR 268
P+ R ++ S RKE R SRSR RS P L+ R+R
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSR 42
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -1
Query: 381 PELFRKTKVCSGRKESVRKGSRSRYRSSMVPGLQVRTR 268
P+ R ++ S RKE R SRSR RS P L+ R+R
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSR 42
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFW 132
MREIV +Q G+ N +G+ FW
Sbjct: 1 MREIVTIQVGEFANFVGSHFW 21
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G Q+G WE+ +P +P + GD + T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNT 51
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G Q+G WE+ +P +P + GD + T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNT 51
>At5g56530.1 68418.m07055 expressed protein contains similarity to
carboxyl-terminal proteinase contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 420
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 259 GGHPRSNLEPGHHGTSVPASGTFSDRFFPSGTNFR 363
GG + E GHH T+ SG F D F + FR
Sbjct: 333 GGEVVNMEEDGHHTTTQMGSGQFPDEGFTKASYFR 367
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +1
Query: 454 GSCDVSPAKNSEFLAIGXTGGFPNLTTFPLRWAGNPGSGYGATPALHSSKDSRXKSNPPE 633
G+ S K S LA+G N WA N G+G A P L S+ + PP
Sbjct: 425 GTVPESSLKQSATLALGPGSSGSNPP-----WANNAGNGASAHPGLGST-----PTKPPS 474
Query: 634 QKFMETTL 657
+++ ET L
Sbjct: 475 KEYDETNL 482
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +1
Query: 454 GSCDVSPAKNSEFLAIGXTGGFPNLTTFPLRWAGNPGSGYGATPALHSSKDSRXKSNPPE 633
G+ S K S LA+G N WA N G+G A P L S+ + PP
Sbjct: 425 GTVPESSLKQSATLALGPGSSGSNPP-----WANNAGNGASAHPGLGST-----PTKPPS 474
Query: 634 QKFMETTL 657
+++ ET L
Sbjct: 475 KEYDETNL 482
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G Q+G WE+ +P +P + GD + T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNT 51
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 70 MREIVHLQAGQCGNQIGAKFWEIISXRARHRPHRCLPWGL*LAVGDASMYT 222
MRE + + GQ G Q+G WE+ +P +P + GD + T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNT 51
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 463 DVSPAKNSEFLAIGXTGGFPNLTTFPLRWAGN 558
DV+ A + F IG G ++TT P+ W G+
Sbjct: 147 DVAAAIKAGFYDIGIGAGLESMTTNPMAWEGS 178
>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 520
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 538 PLRWAGNPG-SGYGATPALHSSKDSRXK-SNPPEQKFMETTLTSVSSPLSAPKKLFRNNL 711
P+RW G G+ A + +K S + N KF+ET TSV + + P LFR L
Sbjct: 435 PVRWLRERGIHGHVFACAGNMAKLSENEFRNFTAPKFLETFRTSVGAGIVLPTSLFRMEL 494
>At2g40180.1 68415.m04941 protein phosphatase 2C, putative / PP2C,
putative contains PF00481: Protein phosphatase 2C
domain; identical to protein phosphatase 2C (GI:4587992)
[Arabidopsis thaliana]
Length = 390
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 625 PPEQKFMETTL-TSVSSPLSAPKKLFRNNLVRSKPLNKWRTSSQVSTRLKLK 777
PP F T++ T +SSP S+P KL KP T S T LK K
Sbjct: 39 PPPLVFSPTSVKTPLSSPRSSPPKLTMVACPPRKPKETKTTGSDSETVLKRK 90
>At1g31800.1 68414.m03903 cytochrome P450 family protein similar to
Cytochrome P450 97B2 (SP:048921) [Glycine max]; contains
Pfam profile: PF00067: Cytochrome P450
Length = 595
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 630 GAEIHGNNINFS*FPPFG--PQKVIQEQLGSFETIKQMANFFSSFN 761
G + N NFS + PFG P+K I + SFE + +A FN
Sbjct: 494 GPNPNETNQNFS-YLPFGGGPRKCIGDMFASFENVVAIAMLIRRFN 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,669,342
Number of Sequences: 28952
Number of extensions: 391607
Number of successful extensions: 1055
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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