Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0865
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   5.3  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    25   7.0  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   9.3  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   LQKSSLTSISHSNLHHLFIFKYKNYDFIKLHCS 100
           L  S ++S S  N+H L+ F  K+ +  KLH S
Sbjct: 333 LDFSDISSPSVMNIHPLYSFSSKSLESSKLHYS 365


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 513 MYSSYIECPQCLHYCTSHLVL 451
           +++ +  CP C H C +H+ L
Sbjct: 252 VHTFHATCPSCSHQCDTHMKL 272


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 218 HAVDDCSNVGYTCPRDVRFTRTTQG 292
           H    C  +GYT P  VR  R ++G
Sbjct: 319 HTQTPCGTMGYTAPEIVRDERYSKG 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,795
Number of Sequences: 5004
Number of extensions: 42311
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)