Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0865
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)                   34   0.11 
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)                 28   5.6  
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)
          Length = 428

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 641 HLKFALDFVNLIFAXHLLSHPGIFTIKYICH--LWYALVNFNYFECTAVISNAHNVY 477
           HL++ + ++  ++A   + +  IF +++ CH  LWY LV      C A I N  ++Y
Sbjct: 374 HLEYVMPYLEYVYAIFGVRY-AIFGVRF-CHIWLWYTLVTIRKLSC-AAIKNGKSIY 427


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 492 IRYNCCTFKIIKVNKCVPKMTYIFNGENT 578
           +R + CT  +I   KC+PK+ +  + +NT
Sbjct: 246 MRKSVCTLHLIGAAKCMPKVAHCLSSDNT 274


>SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)
          Length = 538

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 605 FAXHLLSHPGIFTIKYICHLWYALVNFNYFECT 507
           F+   LSH G F + Y+  L Y+L  F Y  CT
Sbjct: 396 FSDRFLSHVGHFKVVYMGLLCYSLRFFYYSYCT 428


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 468  CNSVNIVGIRYNCC-TFKIIKVNKCVPK 548
            C+S++  G++Y+CC    +I+VN  +P+
Sbjct: 1249 CDSLSFPGLKYSCCDKGGVIRVNFSLPR 1276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,658
Number of Sequences: 59808
Number of extensions: 339614
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)