Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0865
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024810-9|AAF60766.1|  547|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF125448-7|AAD12812.2|  302|Caenorhabditis elegans Cyclin c prot...    28   6.5  

>Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical
           protein W06G6.6 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -3

Query: 553 VIFGTHLLTLIILNVQQLYRMPTMFTLLHFAPCAHMPSSVKDVFFWI 413
           ++ G  ++ L++L +Q +      F L H +PC ++ S + ++FFWI
Sbjct: 51  IMTGIAIIDLVVL-LQVILERGLWF-LTHDSPCINLHSFIFEMFFWI 95


>AC024810-9|AAF60766.1|  547|Caenorhabditis elegans Hypothetical
           protein Y54E10A.12 protein.
          Length = 547

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 5   QKSSLTSISHSNLHHLFIFKYKNYDFIKLHCS 100
           +K+ L     SNLHH  +  + NY+F+++  S
Sbjct: 19  RKNDLCERKSSNLHHFCVEFHNNYEFLEIGLS 50


>AF125448-7|AAD12812.2|  302|Caenorhabditis elegans Cyclin c protein
           1 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 233 NHPPRDLKDDVTDCERVLSACLRCSIFLVY 144
           N P +DL+     C++V +  LRC + L++
Sbjct: 185 NQPIKDLEAIEAQCQKVANDSLRCDVSLIF 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,249
Number of Sequences: 27780
Number of extensions: 252794
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)