Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0865
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 3   YKNHRLRQYHTRTYIIYLYLSIKTMTSLN 89
           Y  HR  ++  +  I+Y ++++ ++ S+N
Sbjct: 17  YDKHRAPKFLGQPTIVYFHVTVLSIDSIN 45


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  FKYKNYDFIKLHCSHRVKKYI-IHHSETLDI 148
           + Y N ++ KL+C++  K Y  I++ E + I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  FKYKNYDFIKLHCSHRVKKYI-IHHSETLDI 148
           + Y N ++ KL+C++  K Y  I++ E + I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 526 KLTSAYQR*HIYLMVKIPGWD 588
           K T+ ++    Y +VKIP WD
Sbjct: 168 KTTACFEPSLDYCVVKIPRWD 188


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  FKYKNYDFIKLHC-SHRVKKYIIHHSETLDI 148
           + Y N ++ KL+C ++R   Y I++ E + I
Sbjct: 89  YNYNNNNYKKLYCNNYRKLYYNINYIEQIPI 119


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 462 HLVLTCLVRLRTFSF 418
           HL+L+C  RL  F F
Sbjct: 181 HLILSCQGRLNIFPF 195


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 462 HLVLTCLVRLRTFSF 418
           HL+L+C  RL  F F
Sbjct: 181 HLILSCQGRLNIFPF 195


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 462 HLVLTCLVRLRTFSF 418
           HL+L+C  RL  F F
Sbjct: 232 HLILSCQGRLNIFPF 246


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 462 HLVLTCLVRLRTFSF 418
           HL+L+C  RL  F F
Sbjct: 181 HLILSCQGRLNIFPF 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,535
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)