Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0863
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    28   7.9  
04_04_0085 + 22624918-22625035,22625225-22625421,22625460-22625597     28   7.9  
01_06_1737 - 39559321-39559461,39559761-39559817,39559919-395601...    28   7.9  

>07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,
            1141770-1142063,1142145-1142337,1142624-1142694,
            1142781-1144200
          Length = 1254

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 344  CEGRI*SLEQISIDGVTSYPERLVHIFL 427
            C G+  S + + + G T++PE+++ +F+
Sbjct: 1087 CHGQSRSSDMVELSGTTTFPEQVIKLFV 1114


>04_04_0085 + 22624918-22625035,22625225-22625421,22625460-22625597
          Length = 150

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 414 YIYFWLLYCKIYSAI-IWLFGNHCRGTDKARAV*PA-VSAGSRXEASIEFARVRKXTQQY 587
           + YFW  +  +YSA  + L      G  KA AV  A  SA +R    +E+ R    TQ  
Sbjct: 31  FFYFWRFFSGVYSASDVGLGLGDTSGNGKAVAVEAARGSAVARQSGQVEWRRSHAPTQSA 90

Query: 588 HRTKHVGLLARRPSYKRIVMXPG 656
              + V   A R   +++V   G
Sbjct: 91  WNVEPVA--APREEARQVVRALG 111


>01_06_1737 -
           39559321-39559461,39559761-39559817,39559919-39560117,
           39560217-39560344,39560443-39560548,39560721-39560800,
           39561189-39561286,39561368-39561481,39561567-39561707,
           39561801-39561885,39562761-39563099
          Length = 495

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 531 SRXEASIEFARVRKXTQQYHRTKHVGLLARR--PSYKRIVMXP 653
           SR EA+   + + +  QQY  T  +G+L RR   S +R+ + P
Sbjct: 336 SRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPERVPLPP 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,904,290
Number of Sequences: 37544
Number of extensions: 365231
Number of successful extensions: 816
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)