Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0863
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38662| Best HMM Match : HC2 (HMM E-Value=0.75)                      31   0.87 
SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09)         29   4.6  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   6.1  

>SB_38662| Best HMM Match : HC2 (HMM E-Value=0.75)
          Length = 280

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 557 RTRSQXNATVSSHETRRPFSKKTLVQENSNGAR 655
           RT S  + +VSSH T RP S+KT V++ S+  R
Sbjct: 59  RTSSSRSTSVSSHRT-RPSSRKTSVRKTSSSRR 90


>SB_46977| Best HMM Match : Cu_amine_oxid (HMM E-Value=3.9e-09)
          Length = 549

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 43  RVIL*QCVKYVQG*SKPTERAALVPVWKAIR--RLQLIARS 159
           RV L  C+ +V+    P    A  P W AIR   L+L+ RS
Sbjct: 392 RVYLAWCILFVETRGNPKSLKAFQPFWPAIRLSELELVRRS 432


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 596 RAMILLRXLANACELDGGFXATARRYRWLYGTSLISSTAVIAEQPYNRRID 444
           R ++ +R +A  C L G F  T+    W +G +L     + AE PY    D
Sbjct: 406 RVILPIRWMAPECILQGKF--TSASDVWAFGVTLWEILTLAAEYPYGDLTD 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,465,310
Number of Sequences: 59808
Number of extensions: 438928
Number of successful extensions: 1260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)