Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0863
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    27   9.4  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    27   9.4  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    27   9.4  

>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 257 YHSIKVPKNVRLQFINRNSGPTSHREHDTAGVRLRAISCSLRIAFQTG 114
           +  I +PK+   + IN     T      +   +LRA++C+L++  +TG
Sbjct: 488 FRFIGLPKSEPSELINLERFTTVLERSTSESTKLRAVNCALQLEKKTG 535


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 257 YHSIKVPKNVRLQFINRNSGPTSHREHDTAGVRLRAISCSLRIAFQTG 114
           +  I +PK+   + IN     T      +   +LRA++C+L++  +TG
Sbjct: 488 FRFIGLPKSEPSELINLERFTTVLERSTSESTKLRAVNCALQLEKKTG 535


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 294 IVVRPCIAVNVSIPFD*SPKKRQTSIYQ 211
           I++ P  AV++ +PFD +  K+  S+Y+
Sbjct: 370 IIINPYFAVSLYLPFDLAKPKKPESLYR 397


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 257 YHSIKVPKNVRLQFINRNSGPTSHREHDTAGVRLRAISCSLRIAFQTG 114
           +  I +PK+   + IN     T      +   +LRA++C+L++  +TG
Sbjct: 488 FRFIGLPKSEPSELINLERFTTVLERSTSESTKLRAVNCALQLEKKTG 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,205
Number of Sequences: 27780
Number of extensions: 326833
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)