Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0863
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25500.2 68414.m03166 choline transporter-related contains we...    29   2.2  
At1g25500.1 68414.m03167 choline transporter-related contains we...    29   2.2  

>At1g25500.2 68414.m03166 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 488

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 252 MVLKRSPLYTGALLCATI*CIL*GT--HLLITTAKEEFSHSSRSQLMALLR 398
           +VL  S  +TGA+LC T+  I+ G   H+L    +EE S    S L+  LR
Sbjct: 236 VVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLR 286


>At1g25500.1 68414.m03167 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 432

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 252 MVLKRSPLYTGALLCATI*CIL*GT--HLLITTAKEEFSHSSRSQLMALLR 398
           +VL  S  +TGA+LC T+  I+ G   H+L    +EE S    S L+  LR
Sbjct: 236 VVLSVSLFWTGAVLCNTVHVIVSGMVFHVLFHCGQEESSSLPPSSLVDSLR 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,938
Number of Sequences: 28952
Number of extensions: 294212
Number of successful extensions: 668
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)