Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0862
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.59 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.2  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   5.5  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 536 ESEP--QKPVTSPKEWKIRNLCRPVHWS 459
           E++P  ++P+T  ++W + N+ R   WS
Sbjct: 20  ENDPFLKRPITGDEKWVVNNIKRKRWWS 47


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 238 LQRDRSGKHVPRAVFVDLEPTVVDEVRTGTYRQL 339
           L+  R+  H+    + D+EPTV         RQL
Sbjct: 234 LEERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 614 SPGLDGELPSFKLLARSQRRDAPINKESEPQKPVTSPK 501
           S  LD  +P+   L ++   + P  KE EP  PVT P+
Sbjct: 16  SATLDTVVPNSGELFKAGSAEQP--KEQEPLPPVTPPQ 51


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 146 PSRHYRSGLR 117
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 209 RWSCLWASGHQAGCRAPGSKAPSRHYR 129
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 209 RWSCLWASGHQAGCRAPGSKAPSRHYR 129
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 209 RWSCLWASGHQAGCRAPGSKAPSRHYR 129
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 MARCPQTRPSGVETILSTLSSARPE 254
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,655
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)