Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0861
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          28   1.6  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   2.8  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.7  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   3.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.9  

>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 451 VNWCYVYSSILYQYMLYDSIFSNPKYQSKIVIFXFSFFTKPTEIIVFIPNG 299
           VNW Y++S +L        I+S         ++   F T+  E+I  IP G
Sbjct: 62  VNWAYIFSWVLSNMDAVACIYSTSVAAVGASMYNEKFTTQSKEMIKGIPKG 112


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -1

Query: 439 YVYSSILYQYMLYDSIFSNPKYQSKIVIFXFSFFTKPTEIIV--FIPNGICTLFLVHT 272
           +VY+ +     LYD  F++P ++ +   F FS   K T+ ++  F    I  L+ +H+
Sbjct: 297 FVYNYLPSCPSLYDLFFASPVFRKRTSSFYFSQPLKATKEVLWCFASQLISALYSIHS 354


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 104 IVFFFIA*NFLDIKYFKNSEPLREFI 181
           I+FF+IA   L  KYF N  P +E I
Sbjct: 519 ILFFWIARMALLCKYFSNELPFKEII 544


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 439 YVYSSILYQYMLYDSIFSNPKYQSKIVIFXF 347
           Y+YS  L++Y L D  F        I+IF F
Sbjct: 300 YIYSRSLFEYQLSDEDFRLQAILQLIIIFDF 330


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 412 YMLYDSIFSNPKYQSKIVIFXFSFFTKP 329
           ++LY  +  +PK+   ++ +  +FF+KP
Sbjct: 340 HLLYKYLLFSPKFPKSLLQYVITFFSKP 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,782
Number of Sequences: 5004
Number of extensions: 63395
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)