Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0861
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37399| Best HMM Match : Transposase_11 (HMM E-Value=0.0017)         29   3.0  
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   29   4.0  

>SB_37399| Best HMM Match : Transposase_11 (HMM E-Value=0.0017)
          Length = 340

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 697 IYHRMVERSITGYHGTRN*YRTEPALILGTNHHTRYAYISFLFNIH 560
           IY  + E  I  Y G R+ +     LI+    H RY +  F+ ++H
Sbjct: 186 IYRPLTEPQILFYSGHRHYHCFNTLLIIDNQGHLRYVHAGFMGSMH 231


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 619 LVLVPSGINSWSHGIRLWIAPPSGGKW-GSPISIPRMVQSKV 741
           L L+P  +  + HG  L I  PS   W G  I++ RM+++ +
Sbjct: 287 LPLIPQALPRYLHGHTLVIEAPSKSSWHGVHINVKRMIRNSL 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,156,540
Number of Sequences: 59808
Number of extensions: 420605
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)