Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0861
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF026209-6|AAB71281.1|  340|Caenorhabditis elegans Serpentine re...    28   6.1  
Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z81562-6|CAB04554.1|  211|Caenorhabditis elegans Hypothetical
           protein K03D7.9 protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 508 WYVQESN*SLFNTHVYLV*VNWCYVYSSILYQYMLYDSIFSNPKYQS-KIVIFXFSFF 338
           W V  SN S   T  Y++ + +C+VY S+L          S+P ++    V++ F FF
Sbjct: 52  WLVTGSNLSKLITFAYVLSIFYCWVYGSLL-------GANSSPTWEDIAFVVYNFIFF 102


>AF026209-6|AAB71281.1|  340|Caenorhabditis elegans Serpentine
           receptor, class j protein24 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 376 YQSKIVIFXFSFFTKPTEIIVFIPN 302
           Y S +++  F FF  PT IIVFIP+
Sbjct: 282 YTSSVLVSTFPFFD-PTAIIVFIPS 305


>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 592 YAYISFLFNIHLTCLQQYY*FRTVCLFIWY 503
           Y YI+  + IHL    ++Y    VC  +W+
Sbjct: 113 YRYIAVFYPIHLKYFDKWYLLIWVCYAVWF 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,399
Number of Sequences: 27780
Number of extensions: 339547
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)