Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0861
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32904.1 68416.m04164 hypothetical protein                          36   0.021
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c...    28   5.7  
At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    28   7.5  
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    28   7.5  

>At3g32904.1 68416.m04164 hypothetical protein 
          Length = 330

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 637 GINSWSHGIRLWIAPPSGGKWGSPISIPR 723
           G   W HG + W  PP+  +W SP ++P+
Sbjct: 266 GKRQWGHGFQQWGTPPTAPQWNSPSNVPQ 294



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 670 WIAPPSGGKWGSPISIPRMVQS 735
           W  PP+  +WG+P S+P+   S
Sbjct: 295 WTIPPTTPQWGTPSSMPQWSSS 316


>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 673

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 668 NRIPWDQELIPDGTSTNFGY*PPYSICLHIILIQYSPNLSTAILLIQNSLFIH 510
           NR  W    +P G  T +G   P +   H++ + Y+P++      I+N+  +H
Sbjct: 585 NRTLWKLGTLPPGLITFYGLTHPLNKAWHVLGLGYNPSIDKKD--IENAAVVH 635


>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 640 INSWSHGIRLWIAPPS 687
           I  W HGIR W+ PP+
Sbjct: 827 IARWIHGIRTWVHPPT 842


>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 656 WDQELIPDGTSTNFGY*P-PYSICLHIILIQ 567
           WDQEL+P  TS    Y P P  I  H + I+
Sbjct: 807 WDQELVPPRTSEPMDYTPEPTQILDHDVTIE 837


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,276
Number of Sequences: 28952
Number of extensions: 297917
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)