Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0860
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    27   2.8  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   5.0  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    26   6.6  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   6.6  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   6.6  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   8.7  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   8.7  

>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -3

Query: 662 RFGIKERRTPLRQSITTKLSS 600
           ++ IKE+RT LRQ++ TKL S
Sbjct: 113 KWAIKEKRTFLRQALETKLIS 133


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -2

Query: 447 SVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSE--------DFDGFFHLELVG 292
           +V  RG+ ++ + AS  P++ PA    +N      VED+         DF    H++  G
Sbjct: 631 TVTRRGNANIYKKASDRPWNDPAPRKKKNAPE---VEDTRPLLRAIILDFSAVNHIDTTG 687

Query: 291 VDEGLSTREHAHLY 250
           V   + TR+   +Y
Sbjct: 688 VQALVDTRKELEIY 701


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 662 RFGIKERRTPLRQSITTKLSSXTVMPVVFPEDRVLGGFSHLHHKGFTDD 516
           R  +KE +TP    ++  L S   M  V P+D VL          F DD
Sbjct: 107 RSQVKEGKTPDLDKLSDILRSDEYMISVLPDDSVLFSLGDELDSDFEDD 155


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 62   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 196
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 510 CNEEVGID--LVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVE 337
           CNE+VGID  L+     + L        G+  V +H ++      A  P E +E L V E
Sbjct: 107 CNEKVGIDSSLITFPAAKALRESLFLKSGAVLVGDHDNLVDIVWGASRPKEPLEKLIVQE 166


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 617 TTKLSSXTVMPVVFPED 567
           TT+LSS T  P+V P+D
Sbjct: 147 TTQLSSKTSSPIVIPDD 163


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 83  VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 190
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,232
Number of Sequences: 5004
Number of extensions: 57013
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)