Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0860
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0747 - 26867114-26867225,26868443-26868531,26869342-268693... 28 6.9
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063... 28 6.9
04_03_0421 - 15725045-15725193,15725528-15725599,15725709-157257... 28 6.9
04_03_0412 - 15595781-15596081,15596161-15596331,15596414-155972... 28 6.9
06_03_0771 + 24473176-24473203,24473292-24474025,24474104-244745... 28 9.1
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 28 9.1
05_05_0143 + 22675463-22675592,22676227-22676414,22676492-226766... 28 9.1
04_04_0339 - 24513699-24516827 28 9.1
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 28 9.1
>11_06_0747 -
26867114-26867225,26868443-26868531,26869342-26869380,
26869819-26870077,26870157-26870327,26870410-26870451,
26870896-26871242,26871324-26871785,26871864-26872597,
26872686-26872815
Length = 794
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 84 TIGSLVKTIVP*PP--LIAELTPRPSRP 7
T+G KT + P ++ ++TPRPSRP
Sbjct: 511 TLGDACKTFIQWPKEDIVVKMTPRPSRP 538
>06_03_0262 +
18905352-18905481,18905570-18906003,18906082-18906303,
18906381-18906842,18906935-18907755,18907838-18908008,
18908088-18908347,18908453-18908508,18908786-18908824,
18909711-18909764
Length = 882
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 84 TIGSLVKTIVP*PP--LIAELTPRPSRP 7
T+G KT + P ++ ++TPRPSRP
Sbjct: 481 TLGDACKTFIQWPKEDIVVKMTPRPSRP 508
>04_03_0421 -
15725045-15725193,15725528-15725599,15725709-15725784,
15728607-15728679,15728919-15728983,15729423-15729681,
15729761-15729931,15730014-15730846,15731097-15731390,
15731469-15731939
Length = 820
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 84 TIGSLVKTIVP*PP--LIAELTPRPSRP 7
T+G KT + P ++ ++TPRPSRP
Sbjct: 324 TLGDACKTFIQWPKEDIVVKMTPRPSRP 351
>04_03_0412 -
15595781-15596081,15596161-15596331,15596414-15597246,
15597369-15597788,15597867-15598337
Length = 731
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 84 TIGSLVKTIVP*PP--LIAELTPRPSRP 7
T+G KT + P ++ ++TPRPSRP
Sbjct: 366 TLGDACKTFIQWPKEDIVVKMTPRPSRP 393
>06_03_0771 +
24473176-24473203,24473292-24474025,24474104-24474565,
24474647-24475479,24475562-24475732,24475812-24476112
Length = 842
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 84 TIGSLVKTIVP*PP--LIAELTPRPSRPV 4
T+G KT + P ++ ++TPRPSRP+
Sbjct: 477 TLGDARKTFIQWPKEDIVVKMTPRPSRPM 505
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 84 TIGSLVKTIVP*PP--LIAELTPRPSRPV 4
T+G KT + P ++ ++TPRPSRP+
Sbjct: 304 TLGDARKTFIQWPKEDIVVKMTPRPSRPM 332
>05_05_0143 +
22675463-22675592,22676227-22676414,22676492-22676649,
22676656-22676953,22677035-22677867,22677950-22678120,
22678242-22678458,22678911-22678949,22679167-22679226
Length = 697
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 84 TIGSLVKTIVP*PP--LIAELTPRPSRP 7
T+G KT + P +I ++TPRPSRP
Sbjct: 327 TLGDARKTFIQWPKEDIIVKMTPRPSRP 354
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 283 RSLHAGACPSIHLHELLNDI 224
RSLH +CP +H+ + LN++
Sbjct: 1015 RSLHISSCPKLHIPKSLNNL 1034
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -2
Query: 360 IEVLSVVEDSEDFDGFFHLELVGVDEGLSTREHAHLYISMN 238
+E L + E SE+F G L DE ST + YIS N
Sbjct: 269 LEELRLGETSEEFTGTSSLSTTNDDETSSTTTESMFYISPN 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,034,508
Number of Sequences: 37544
Number of extensions: 438679
Number of successful extensions: 1127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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