Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0859
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0083 - 604175-605776                                             29   2.1  
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047...    28   6.5  
03_01_0235 - 1842909-1843498,1844380-1844569                           28   6.5  

>08_01_0083 - 604175-605776
          Length = 533

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 405 LRRAFLKPSNPMS*SRHAQSIPLHLYP*SRRLLS 304
           L R  ++PS+ +S S HA    +HL P   RLLS
Sbjct: 19  LSRRLVRPSSSLSSSGHAPPCDIHLTPWDLRLLS 52


>08_01_1061 -
           10804269-10804352,10804464-10804593,10804696-10804745,
           10805154-10805216,10806235-10806375,10806541-10806925,
           10807735-10808339
          Length = 485

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 297 TVKKGDVLITGRGVGGLIGHAAIMTSDYWVLEMPG-GDGW 413
           + K+GD +  G  V    G     T DYW LE+ G G  W
Sbjct: 386 SAKQGDPITHGTVVSCFGGENESDTGDYWRLEIEGSGKSW 425


>03_01_0235 - 1842909-1843498,1844380-1844569
          Length = 259

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 202 EQLRDPV*XS-GVAVPKXNSKRTRWITRGSSLTRSRK 309
           ++L DPV    G AV +   +R RW T+GS   RSR+
Sbjct: 128 QRLPDPVLILVGGAVRQQQQERRRWRTKGSQEGRSRR 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,471
Number of Sequences: 37544
Number of extensions: 245421
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)