Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0859
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50010.1 68416.m05468 DC1 domain-containing protein contains ...    29   3.1  
At5g51440.1 68418.m06377 23.5 kDa mitochondrial small heat shock...    27   7.2  
At2g40920.1 68415.m05050 F-box family protein contains Pfam PF00...    27   9.5  

>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 769

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 480 PRRAYRTIXL------SAPVYCCPVCQAPNHLR 400
           PR+A+ T  L      S+P+Y CP C    HLR
Sbjct: 342 PRQAFLTCNLCALADPSSPIYMCPPCDFVTHLR 374


>At5g51440.1 68418.m06377 23.5 kDa mitochondrial small heat shock
           protein (HSP23.5-M) similar to heat shock 22 kDa
           protein, mitochondrial precursor SP:Q96331 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 210

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/24 (50%), Positives = 20/24 (83%), Gaps = 2/24 (8%)
 Frame = -1

Query: 341 PYTSTRN--QDVSFLDRVNELPLV 276
           P+T TR+  Q ++F+D+V+E+PLV
Sbjct: 73  PFTPTRSLSQMLNFMDQVSEIPLV 96


>At2g40920.1 68415.m05050 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein family,
           AtFBX8 (GP:20197464) {Arabidopsis
           thaliana}|502017|gb|T20576.1|T20576
          Length = 436

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +3

Query: 255 QQAHTVDNKREFINTVKKGDV--LITGRGVGGLIGHAAIMTSDYWVLEMPGGDGWELGIP 428
           QQ  T  + R +I      D   L+    +  L+     + S++WV  +  G  W+  +P
Sbjct: 186 QQGQTKHHPRYYIGHDPVSDQYKLVCTVAISSLLPRLGNLKSEHWVFALEAGGSWKKVVP 245

Query: 429 DNN 437
             N
Sbjct: 246 LEN 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,941,296
Number of Sequences: 28952
Number of extensions: 189683
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)