Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0858
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944...    29   2.3  
09_06_0045 + 20462866-20463309,20463417-20463722,20465262-204654...    29   3.1  
12_02_0104 - 13644162-13645457                                         28   5.4  
03_02_0328 - 7487759-7488340                                           28   5.4  
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    28   7.1  
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    28   7.1  
11_04_0039 + 12679350-12680057,12680136-12680582,12680670-126815...    27   9.4  

>02_02_0363 +
           9446055-9446524,9446658-9446771,9446856-9447281,
           9447812-9447893,9447964-9448020,9448633-9448881,
           9448978-9449109,9449163-9449291
          Length = 552

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 239 NRSSPT--GCLA*GTPRKLAYKVLASARRLRPHTQPDSVCATTLHDEGGDAAGL 84
           N S+PT    LA  T  KL     ASA   +P   P SV        G +AAGL
Sbjct: 231 NHSAPTHRNSLAGTTRNKLPSSSAASAASAQPQPPPPSVVVVGAGGGGAEAAGL 284


>09_06_0045 +
           20462866-20463309,20463417-20463722,20465262-20465423,
           20465539-20465814,20466149-20466499
          Length = 512

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 553 PVVKSDDNNVSCDKISGPYRSASPDPNAKPPP*IKTNIGRPG 428
           P +KS    ++C+  +  Y S+SP+PN    P I   +G PG
Sbjct: 430 PSIKSHPQRIACNDGTPYYNSSSPNPN----PLIGAVVGGPG 467


>12_02_0104 - 13644162-13645457
          Length = 431

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 169 PPGDYGHTPSLTPSARPHCTTRAATLLGLNM 77
           P  +    P+++PS+RP C  R   L G+N+
Sbjct: 25  PEEEEQQLPNVSPSSRPTCKARLFELYGMNV 55


>03_02_0328 - 7487759-7488340
          Length = 193

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 184 YASFRGVPYAKQPVGELRFKELQPQSHGPTT*MPPRKVQFAT 309
           +AS   +PYA+ P+       L P +  P   +PP   ++AT
Sbjct: 14  HASLPALPYARPPLYSSPSLPLLPSNQPPLLPLPPAATKYAT 55


>11_01_0179 -
           1412391-1412863,1412947-1413412,1413504-1414551,
           1414639-1414725,1416244-1416411,1416785-1416958,
           1417662-1417720,1418132-1420154,1420549-1420647,
           1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 403 RQLVRRLRSLVFQY*SLFTEVASRL---DLVMLTYTDRISCHKKRCCHHF*LQVEFLWDF 573
           RQL+  LR L+ Q  S+   ++ R+   + +  ++   I  +K +C   F   ++ +WD 
Sbjct: 282 RQLINELRKLI-QNKSILFMLSMRMVMNNCLRKSFGYDILGYKAKCIQRFLFVIDDIWDK 340

Query: 574 SRWILLK 594
             W L++
Sbjct: 341 KSWELIR 347


>10_08_0371 +
           17265691-17265788,17265873-17265971,17266586-17266628,
           17267250-17267321,17267400-17267495,17267609-17267842,
           17267914-17268097,17268247-17268358,17268447-17268533,
           17268703-17268841,17269628-17269718,17270045-17270154,
           17270309-17270413,17270982-17271055,17271379-17271454,
           17271786-17272022,17272419-17272490,17273082-17273153,
           17273240-17273304,17273306-17273383,17273384-17273486,
           17273769-17273858,17274873-17274980,17275063-17275113,
           17276126-17276203,17276284-17276346,17276944-17277140,
           17277243-17277312,17277640-17277828
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 371 RQYTCAFVRPAGSW*DAYEAWSSNISLYS 457
           R++TC +V    SW D   A++S  SL+S
Sbjct: 633 RKHTCTYVVQLDSWRDLTRAFASGRSLFS 661


>11_04_0039 +
           12679350-12680057,12680136-12680582,12680670-12681556,
           12681635-12681805,12681872-12682160,12682390-12682428
          Length = 846

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 145 VCGRSRRAEASTLYASFRGVPYAKQPVGELRFKE 246
           +CG   R + S L   F+ VP A++ +  L FKE
Sbjct: 49  ICGVIGRQKFSILQDDFKLVPAAEKDIASLTFKE 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,525,283
Number of Sequences: 37544
Number of extensions: 454359
Number of successful extensions: 1365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)