Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0857
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   3.6  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   4.8  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   6.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.4  

>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 461 PNTAKPPPIPKTHLKAR 411
           P T  PPPIPK  +K R
Sbjct: 21  PATGPPPPIPKIKIKTR 37


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 475 STNYQLDWFLSAMMPIKKPIA 537
           ST  + D +L A+MPI KP+A
Sbjct: 13  STEDEYDSYLPALMPIAKPLA 33


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 71  HFPTHIHNIDGYFAIVIAK 127
           ++P H+HNIDG+F   + K
Sbjct: 526 YYP-HVHNIDGFFVAKLKK 543


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 494 SSW*FVDGYYAPNTAKPPPIP 432
           SS    +G+Y PNT  P P P
Sbjct: 711 SSMPTANGFYVPNTYSPVPFP 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,808
Number of Sequences: 5004
Number of extensions: 60558
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)