Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0857
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319...    33   0.23 
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573...    31   1.2  
03_04_0195 - 18356157-18356741                                         29   2.9  

>05_01_0405 -
           3191639-3192059,3192107-3192234,3192312-3192440,
           3193538-3193616,3193716-3193879,3193968-3194153,
           3194258-3194389,3194484-3194575,3195054-3195150,
           3195258-3195485
          Length = 551

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 405 LLTSFEMSLRYRRGLGCVRSIISIHKLP-ARLVSVCYD 515
           LLT++EMS RY    GC++ +  +   P  R+V+VC +
Sbjct: 420 LLTTYEMSTRYLVAQGCIKPLCDLLVCPDPRIVTVCLE 457


>10_06_0130 -
           11055305-11055593,11055666-11055949,11057271-11057398,
           11058522-11058606,11058917-11060872
          Length = 913

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 454 QPSPRLYRRLISKLVRRTCHKDTEKTWR*VRYKVS*YVTDIIFGKAMEERSYCRL 290
           QPS R Y  ++S L R  CH D    +R + ++     T   FG A   R+ CRL
Sbjct: 136 QPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVA--ARALCRL 188


>03_04_0195 - 18356157-18356741
          Length = 194

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 489 LVVCGWILCSEHSQAPAYTEDSSQSSLEGH----VTRTQKK 379
           +V+CGW+  +  S A   T+ +S SS E +     TR QK+
Sbjct: 124 VVLCGWLPATRQSMASIGTQANSNSSAEANNNPTATRAQKR 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,501
Number of Sequences: 37544
Number of extensions: 362373
Number of successful extensions: 813
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)