Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0857
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)               30   1.7  
SB_35700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_25356| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)                   28   9.0  

>SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)
          Length = 652

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 44  ATLDRFVSSHFPTHIHNIDGYFAIVI 121
           A + R V+S+FP   H+  GYFAI++
Sbjct: 421 AAIKRTVNSNFPKPFHHFTGYFAILM 446


>SB_35700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 44  ATLDRFVSSHFPTHIHNIDGYFAIVI 121
           A + R V+S FP   H+  GYFA+++
Sbjct: 358 AVIKRTVNSDFPKPFHHFTGYFALLV 383


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = -1

Query: 420 QSSLEGHVTRTQKKHGGKFVTKFLST*QILSLGKQWKNAAIVGCNNDPNFTQCNLPITNR 241
           +S+L G++ R       K + K  +T Q+LS   +W + A V    DPNF++C   I + 
Sbjct: 105 ESALAGYLGRNVVT---KSIYKRKTTNQLLSY--EWHSGAKVRIQRDPNFSKCYQIIWSP 159

Query: 240 SVGSVA 223
              SV+
Sbjct: 160 GSSSVS 165


>SB_25356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 460 RTQPSPRLYRRLISKLVRRTCHKDTEKTWR 371
           R Q + R YRR++S   RR  H+   + WR
Sbjct: 7   RLQTARRYYRRVVSAQCRRKMHEVYREPWR 36


>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
          Length = 143

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 459 EHSQAPAYTEDSSQSSLEG 403
           E  QAPA +ED S SSL+G
Sbjct: 9   EREQAPAVSEDDSDSSLKG 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,305,342
Number of Sequences: 59808
Number of extensions: 430710
Number of successful extensions: 889
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)