Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0857
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65360.1 68414.m07414 MADS-box protein (AGL23) similar to MAD...    30   1.4  
At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein c...    28   7.3  
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro...    27   9.7  

>At1g65360.1 68414.m07414 MADS-box protein (AGL23) similar to
           MADS-box protein GI:2505875 from [Arabidopsis thaliana];
           contains Pfam profile PF00319: SRF-type transcription
           factor (DNA-binding and dimerisation domain)
          Length = 226

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = -1

Query: 300 IVGCNN---DPNFTQCNLPITNRSVGSV-A*LFEILKLK*ENAKKDAYVDNAQKWWSR 139
           +VG NN   D ++T+ ++ + N+S   V A + +  K K   A+ +   +NA++WWS+
Sbjct: 78  VVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQNERENENAEEWWSK 135


>At4g36250.1 68417.m05156 aldehyde dehydrogenase family protein
           contais aldehyde dehydrogenase (NADP) family protein
           domain, Pfam:PF00171
          Length = 484

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 215 NSQATDPTDRLVIGKLHCVKFGSLLQPTIAAFFHCFPKDNIC 340
           N QA    D ++I K        +L+PTI +FF   PK++ C
Sbjct: 248 NGQACISVDYVLIEKSFAPTLIDMLKPTIKSFFGENPKESGC 289


>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
           protein similar to oligopeptide transporter Opt1p
           [Candida albicans] GI:2367386; contains Pfam profile
           PF03169: OPT oligopeptide transporter protein
          Length = 766

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 283 IIATYNSCVLPLLSQR*YLLRTKKLCNELTSMFFLCPCDMSF*RALR*VFGIGGGLAVFG 462
           I+ T  SC + L +    +     +C+ +T+  + CP D  F  A   ++G+ G   +FG
Sbjct: 565 IVGTLISCFVYLTTAWWLMETIPNICDSVTNSVWTCPSDKVFYDA-SVIWGLIGPRRIFG 623

Query: 463 --A*YPSTNYQLDWFLSAMMPI 522
               Y S N+   + + A+ PI
Sbjct: 624 DLGLYKSVNW--FFLVGAIAPI 643


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,953
Number of Sequences: 28952
Number of extensions: 310124
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)