Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0856
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.68 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.6  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   3.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.8  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 246 QKMPRSRRRPHPQRADE*LHRRHQGGSRRQDGDPRGKTRGLHQRAALPS 392
           ++  RSR R      +E  +R ++  SR +  D RG+ R    R  +PS
Sbjct: 285 RRYSRSREREQKSYKNEREYREYRETSRERSRDRRGRGRSREHR-IIPS 332


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
 Frame = +1

Query: 349 EEKREAYINELRSRLKDHLEGV---------EKTRLTLEQQTAEVYKAIEDK 477
           E+K  + + +  S+L D LE V         E  +LTL Q+TA+ +K ++DK
Sbjct: 354 EKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTL-QETADAFKDLQDK 404


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 378 LVDVGLAFFLVGLHLGVESLLGGDDEVI 295
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 378 LVDVGLAFFLVGLHLGVESLLGGDDEVI 295
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 17  LMDSDVIFVTINYRLGILGFLSTEDEVV 44


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 378 LVDVGLAFFLVGLHLGVESLLGGDDEVI 295
           L+D  + F  +   LG+   L  +DEV+
Sbjct: 146 LMDSDVIFVTINYRLGILGFLSTEDEVV 173


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 LTRKDSFRRRDPREAEGSRRE 205
           L   +SFR+R  REA G+ R+
Sbjct: 433 LAGDESFRKRRQREAAGNCRK 453


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 552 SSQGSAPVNQEKFQQLRERHPGEAAARPPNRRL 650
           SS G +PV+      +     G     PP R+L
Sbjct: 69  SSSGDSPVSSHSSNGIHTGFGGSIITIPPTRKL 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,000
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)