Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0854
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   7.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.3  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   7.3  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    25   9.6  

>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 418 IXNNVRIVDTCLSD*FTDQPT 480
           + N+V I D  L + F DQPT
Sbjct: 269 VNNHVEITDAFLKEFFNDQPT 289


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 371 TMIRITKHHCTASAGTRYPTTPINYSN 291
           T   +T  +CT S    Y +TP+  SN
Sbjct: 487 TSTPLTTTNCTTSTSVPYTSTPVTSSN 513


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 356 TKHHCTASAGTRYPTTPINYSNESH 282
           T+H   +S  TRYP  P N +  SH
Sbjct: 239 TRHGIASSGSTRYPFVPAN-TRASH 262


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 463 INQINKYPQYVHYFXFIIHYVHSVRNPY 380
           IN+I+KY QY+     ++ Y+ S    Y
Sbjct: 94  INKIDKYAQYIQSHPNLLLYLSSPERQY 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,811
Number of Sequences: 5004
Number of extensions: 35073
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)