Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0854
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53183| Best HMM Match : Ras (HMM E-Value=0)                         28   4.3  
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_46085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)                27   7.6  

>SB_53183| Best HMM Match : Ras (HMM E-Value=0)
          Length = 834

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 138 YWGXRLR--NFREYFMLLCQLTRDRDRSKHESLF 233
           Y+G  L   N  E F L C+ T    RSKHE+L+
Sbjct: 250 YYGIMLEHVNTEEAFWLSCKSTVSEVRSKHEALY 283


>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
 Frame = -2

Query: 514 NKYKSIITRIKMLVGQ*INQINKYPQYVHYFXFIIHYVHSVRNPYTNKQ*FVLRSIIALR 335
           N++  +I +  +++ Q    I+++   +H F  +IH    V + +T     V+     + 
Sbjct: 391 NQFTIVIHQFTIVIYQFTIVIHQFTIVIHQFTIVIHQFTIVIHQFT----IVIHQFTIVI 446

Query: 334 LQELDILQHP*IIQMRVTFRKYTLICFNDSHVY*NKLSCLERSRSRVN*HSNIKYSLKFL 155
            Q L+  Q   I+  R    K+ L+     H   N L CL  S    +    I+  L  +
Sbjct: 447 HQFLNTQQRA-IVSAREEGLKHLLVS-TKQHKGQNDLQCLRASEPYSSQRLVIREVLLVI 504

Query: 154 SL-XPQYIIRLKNYGXXCXGIIILETS 77
           SL  P+ ++ ++         I+L+TS
Sbjct: 505 SLFYPRKLLDVEPMIRPSEAFILLKTS 531


>SB_46085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 503 KYNNSY*NVGWSVNQSDKQVSTI 435
           K+N+++ N+ W   +S+ QVSTI
Sbjct: 69  KFNSTFRNIDWITGESEIQVSTI 91


>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
          Length = 810

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 443 STIRTLFXIYNSLCTFCS*SLHK*TMIRITKHHCTASAGT 324
           +T+R+LF    +  T C+ S HK T+  +    CT +AGT
Sbjct: 586 TTLRSLFCTLTAGTTLCTLSSHKTTLRSLV---CTLTAGT 622


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,870
Number of Sequences: 59808
Number of extensions: 238898
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)