Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0854
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 45  SRVSLEDGGVLSCRA 1
           S V +EDGG  SC A
Sbjct: 487 SHVMVEDGGEYSCMA 501


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 45  SRVSLEDGGVLSCRA 1
           S V +EDGG  SC A
Sbjct: 487 SHVMVEDGGEYSCMA 501


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 168 EYFMLLCQLTRDRDRSKHESL 230
           E FM+LC L R  +R +   L
Sbjct: 449 EKFMILCNLMRTMNRKQISEL 469


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 304 MGVVGYLVPADAVQ*CFVIRIIVYLCKDYEQNVHNEL 414
           + ++  +VP + VQ CF      Y+ K+      +E+
Sbjct: 188 LDIIRNMVPENLVQACFQQAQTTYVTKEVATGTASEI 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,282
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)