Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0853
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    28   1.6  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.1  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    27   3.7  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   4.9  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   8.6  

>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/64 (23%), Positives = 33/64 (51%)
 Frame = +3

Query: 225 EHRSYRSWIGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQAS 404
           E ++  + +G+  + + LAS    ++AE   LR  +  L ++  +     + A+QHLQ  
Sbjct: 48  EDKAVYTSLGKMFMKSDLASVRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKI 107

Query: 405 EQRV 416
           ++ +
Sbjct: 108 KESI 111


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 587 INPMSPTPPMHFAQQVNAGLRDSGPPAQAPQPGSYSTRS 703
           I+  +P    H A + +A LR++      P P S+S+ S
Sbjct: 62  ISSAAPLDETHIATKASASLRNNNVSPHIPSPSSFSSSS 100


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 300  EAEKQKLRTQVRRLCQENAWLRDELAAAQ 386
            E   +KL+   +RLCQ+NA LR   A ++
Sbjct: 3900 EISLEKLQNSWKRLCQKNAILRTHFAISE 3928


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 305 CLDGLKVRCQSRHYLSFPNPRSIASML-FFTREAFSFSC 192
           CLD   +R     YLS   P  ++ +L  F R+  +F+C
Sbjct: 259 CLDAFDLRSAFSTYLSLNQPMVVSVILPIFKRQLVAFAC 297


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 593  PMSPTPPMHFAQQVNAGLRDSGPPAQAPQPGSYSTRSQGPVXXRRAPL 736
            P  P PPM      +A    +GPP+  P P   S+    P    R+ L
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSAL 1752


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 425 EEENKHLEFMASIRKYDSDINEESDS 502
           E + KHL F A +RK +S++N+ + S
Sbjct: 166 ENKIKHLSFHAYLRKINSNVNKYASS 191


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 297 VEAEKQKLRTQVRRLCQENAWLRDELA 377
           V+A   KLR +  + C+ N WL  +LA
Sbjct: 13  VQAIWPKLRKEAEKQCEVNPWLAKDLA 39


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 316 NSARRFAGCAKRTPG*GTSWLQLSNTCRLPNNAYTAGG 429
           +S + FA  AK  P   TS++ L    RLP +    GG
Sbjct: 35  DSHKSFANMAKNVPLPNTSYISLRGPYRLPLDFENPGG 72


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +2

Query: 257 SSGNDGSGISPSVRRGREAKTPHAGSQAVPRERLAEGRAGCSSATPAGFRTTRTQL 424
           SS  + S  +PS     E K     + A P E  +      S ATP+G   T   L
Sbjct: 27  SSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASL 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,166
Number of Sequences: 5004
Number of extensions: 46071
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)