Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0853
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51642| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 6e-18
SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 31 0.74
SB_32484| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_10317| Best HMM Match : rve (HMM E-Value=8e-07) 31 1.3
SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20) 30 1.7
SB_50076| Best HMM Match : Filament (HMM E-Value=0.15) 30 1.7
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079) 30 2.3
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11) 30 2.3
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4) 29 3.0
SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10) 29 5.2
SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022) 29 5.2
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 28 6.9
SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26) 28 6.9
SB_44682| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0) 28 6.9
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16) 28 9.1
SB_47122| Best HMM Match : H2TH (HMM E-Value=0.65) 28 9.1
SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 9.1
SB_39850| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 9.1
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 28 9.1
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2) 28 9.1
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 28 9.1
SB_8542| Best HMM Match : PT (HMM E-Value=4) 28 9.1
SB_4788| Best HMM Match : rve (HMM E-Value=0) 28 9.1
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 28 9.1
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 28 9.1
SB_48720| Best HMM Match : DAGAT (HMM E-Value=1.5e-09) 28 9.1
SB_46104| Best HMM Match : rve (HMM E-Value=1.4e-10) 28 9.1
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 28 9.1
SB_39172| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058) 28 9.1
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 9.1
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 9.1
SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 28 9.1
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 9.1
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_51642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 88.2 bits (209), Expect = 6e-18
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +3
Query: 249 IGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRV 416
+GEAQV+ AL SHL +VEAEKQKLR QV+RLCQENAWLR+EL+ QQ LQ SEQ V
Sbjct: 73 LGEAQVLMALCSHLSTVEAEKQKLRAQVKRLCQENAWLREELSVTQQKLQESEQSV 128
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +2
Query: 419 QLEEENKHLEFMASIRKYDSDINEESD 499
QLEEE KHLEFM S++KYD D E+D
Sbjct: 130 QLEEEKKHLEFMNSLKKYDDDEGIEND 156
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Frame = +1
Query: 88 TQEEMVAGARTVAAGLEALRAEHTQLLAGLA----TNTEHENE----KASLVKKSIEAID 243
TQ+E++ + V GLE L+ EH+ +L GLA T TE ++E KA +V+ S++ I+
Sbjct: 11 TQDEIINNTKNVVRGLETLKNEHSGILNGLALYEDTKTESQSELEEAKAGVVQDSLDKIE 70
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = +3
Query: 645 YEIPGRLRKLHNLVHTVRVRKGRYXVAVPL 734
YEIP RLR LHNLV +GRY VAVPL
Sbjct: 190 YEIPARLRTLHNLV-IQYASQGRYEVAVPL 218
>SB_18177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 33.5 bits (73), Expect = 0.18
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 LSILDWGSSGNDGSGISPSVR-RGREAKT--PHAGSQAVPRERL-AEGRA 373
L++LDW ++ G G SP+ R GR KT P AG+ PR + E RA
Sbjct: 954 LALLDWRNTSTKGVGTSPAQRLMGRRCKTLLPMAGALLQPRHSIEQEARA 1003
>SB_3314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 663
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 219 KEEHRSYRSWIGEAQVMTALASHLQSVEAEKQKLRTQVRRLCQENAWLRD 368
K ++R+YR W+ Q +A+ +Q EA + +R + C WL D
Sbjct: 495 KTDNRTYRVWLDTNQYQQDMAATVQGAEAVLETIRDLMNAECIVPDWLHD 544
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +1
Query: 559 DDDHDDNR---NNKSDVADAADALRPASERRVTRF 654
D+D+DDN +K+D AD D +RP R T+F
Sbjct: 139 DEDNDDNNASPTSKADYADNYDGVRPKHHHRGTKF 173
>SB_32484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 559 DDDHDDNRNNKSDVADAAD 615
DDD DD++NN D DAAD
Sbjct: 39 DDDDDDDKNNYDDADDAAD 57
>SB_10317| Best HMM Match : rve (HMM E-Value=8e-07)
Length = 195
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 LSILDWGSSGNDGSGISPSVR-RGREAKT--PHAGSQAVPR-ERLAEGRA 373
L++L+W ++ +G G SP+ R GR KT P AG+ PR + A+ RA
Sbjct: 126 LALLNWRNTPTEGIGTSPAQRLMGRRCKTLLPIAGTLLQPRYDTDADARA 175
>SB_56248| Best HMM Match : RVT_1 (HMM E-Value=8.6e-20)
Length = 1193
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +2
Query: 236 LSILDWGSSGNDGSGISPS-VRRGREAKT--PHAGSQAVPR-ERLAEGRA 373
L++L+W + DG G SP+ + GR KT P AG+ PR + A+ RA
Sbjct: 996 LALLNWRNKPTDGIGTSPAQLLMGRRCKTLLPIAGTLLQPRYDTDADARA 1045
>SB_50076| Best HMM Match : Filament (HMM E-Value=0.15)
Length = 380
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 276 LASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASEQRV 416
L H++S+E +K++ Q R +EN L++E AA++ + + R+
Sbjct: 10 LQLHIESLEQQKRRNEEQFRTARRENRRLQEETNAAKRQISERDWRL 56
>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
Length = 502
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 411 VVRKPAGVAELQPARPSARRSLGTACEPACGVFASLPRRTEGEMPEPSLPELPQS 247
+ R+P G P +PS + SLGT +P + R T+ +P ++ E QS
Sbjct: 289 ITREPKGPPPTPPPKPSRKHSLGTR-KPISLQESKQRRNTDPSLPPGTILEAQQS 342
>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
Length = 396
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 369 RPSARRSLGTACEPACGVFASLPRRTEGEMPEPSLPELP 253
RPS+RRS+G A P + S P + E P+PS+ P
Sbjct: 179 RPSSRRSVGAAIAPPSSLLESEPIVPQKE-PDPSIDGRP 216
>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 568 HDDNRNNKSDVADAADALRPASERRVTRFRAACASS--TTWFI 690
+++ +++D++D D +S RR +FR CASS + WF+
Sbjct: 939 YEEGEESETDMSDDEDTSE-SSPRRCAKFRDGCASSVDSKWFM 980
>SB_39441| Best HMM Match : SERTA (HMM E-Value=3.4)
Length = 463
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -1
Query: 263 LSFPNPRSIASMLFFTREAFSFSCSVLVARPASSCVCSALRASSPAATV 117
LS PR+ A M F A S +C LV +P S + + ASS V
Sbjct: 391 LSLSFPRAWADMGFLGHHAISINCQSLVPKPLPSWPLALVIASSHVVLV 439
>SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 505 PSGQGEKKREDPMVELFPDDDHDDNRNNKSDVADAAD 615
PS Q EK+ E+ ++ DD+ D++ N+ DV DA D
Sbjct: 124 PSPQPEKETEE--IDNDDDDEDDNDENDNVDVDDADD 158
>SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)
Length = 948
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 559 DDDHDDNRNNKSDVADAADAL 621
DDD+DD+ NNK+D+ A + L
Sbjct: 58 DDDNDDDDNNKADLTIAKETL 78
>SB_6591| Best HMM Match : UCH (HMM E-Value=0.00022)
Length = 340
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 246 KIDSFDALLYQRSLFIFVFRVGCEASQQLRVLGPQGLEPRG 124
+ID L Q FI + +VGC ++ QGL+PRG
Sbjct: 46 EIDQQTQLKTQIDTFILILQVGCTLEEEDYFELEQGLKPRG 86
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 267 MTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQASE 407
+ AL + V+AEK LR + + E W R E A++ Q E
Sbjct: 387 LRALQERAKDVQAEKDALRAKRNQEEAEREWRRKEREEAEKQKQTEE 433
>SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26)
Length = 316
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 155 ALLDWRNTPTTGIGTSPAQRLFGRRCKTLLPVAGSLLQP 193
>SB_44682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 49
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 306 EKQKLRTQVRRLCQENAWLRDELAAAQQHLQ 398
E+QK+ T+++RL +EN L ++L A L+
Sbjct: 4 ERQKMETELKRLHRENRRLTEDLRTASGQLR 34
>SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)
Length = 408
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +1
Query: 535 DPMVELFPDDDHDDNRNNKSDVADAADALRPASERR---VTRFRAACASSTTWFIQYAFA 705
D ++++ PDD+ +DN N + AA+ L R R A ++ W +
Sbjct: 51 DMILDMEPDDELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGLAQMVTTYGWCLSDVPG 110
Query: 706 RAGTXSPCPSC 738
A CP C
Sbjct: 111 EAMVKLYCPKC 121
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 52 KKIESLGRMTAMTQEEMVAGARTVAAGLEALRAEHTQLLAGLATNTEHEN---EKASLVK 222
K++ESL T +E V +T+ + AE QLL+ L T E N E+ K
Sbjct: 1446 KQLESLVESTDQLMQEKVEVIQTLEGQNAKIEAEKEQLLSELKTQKEKLNTVIEELDDTK 1505
Query: 223 KSIEAI 240
++E I
Sbjct: 1506 STLEII 1511
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 994 ALLDWRNTPTTGIGTSPAQRLFGRRCKTLLPVAGSLLQP 1032
>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
Length = 608
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 434 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 472
>SB_47122| Best HMM Match : H2TH (HMM E-Value=0.65)
Length = 227
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 116 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 154
>SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 342
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 257 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 295
>SB_39850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 42 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 80
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 308 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 346
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 875 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 913
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 543 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 581
>SB_13892| Best HMM Match : Protamine_P2 (HMM E-Value=2)
Length = 228
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 508 SGQGEKKREDPMVELFPDDDHDDNRNNKSDVADAADA 618
S + + DP + + DDD DDN KSD +D ++
Sbjct: 76 SDESDVSETDPSKDQY-DDDGDDNEIEKSDESDVPES 111
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 596 MSPTPPMHFAQQVNAGLRDSGPPAQAPQPG 685
M P P Q+ N G +DS PP PQ G
Sbjct: 1 MQPGAPPLMGQRNNMGAQDSMPPLLPPQAG 30
>SB_8542| Best HMM Match : PT (HMM E-Value=4)
Length = 650
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 213 SGKEEHRSYRSWIGEAQVMTALASHLQSV 299
SG + R Y SW AQV+ L H+ S+
Sbjct: 481 SGNPQSRYYPSWKSTAQVLPLLEIHIPSI 509
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 401 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 439
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 951 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 989
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 281 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 319
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 584 IINPMSPTPPMHFAQQVNAGLRDSGPPAQAP--QPGSYSTRSQGPVXXRRAPL 736
I++P SPTPP+ +Q L D P Q+P P + + +G V P+
Sbjct: 353 IVSPTSPTPPV--LRQKMVALYDYNPETQSPLSNPSAELSFKKGQVVTILGPM 403
>SB_48720| Best HMM Match : DAGAT (HMM E-Value=1.5e-09)
Length = 244
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 559 DDDHDDNRNNKSDVAD 606
DDD+DDN N+ SDV D
Sbjct: 153 DDDNDDNDNDDSDVDD 168
>SB_46104| Best HMM Match : rve (HMM E-Value=1.4e-10)
Length = 263
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 102 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 140
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 584 IINPMSPTPPMHFAQQVNAGLRDSGPPAQAP--QPGSYSTRSQGPVXXRRAPL 736
I++P SPTPP+ +Q L D P Q+P P + + +G V P+
Sbjct: 1901 IVSPTSPTPPV--LRQKMVALYDYNPETQSPLSNPSAELSFKKGQVVTILGPM 1951
>SB_39172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 100 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 138
>SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 559 DDDHDDNRNNKSDVAD 606
DDD+DDN NN D D
Sbjct: 142 DDDYDDNNNNNDDYDD 157
>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
Length = 820
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 213 SGKEEHRSYRSWIGEAQVMTALASHLQSV 299
SG + R Y SW AQV+ L H+ S+
Sbjct: 462 SGNPQSRYYPSWKSTAQVLPLLEIHIPSI 490
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 308 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 346
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 267 MTALASHLQSVEAEKQKLRTQVRRLCQENAWLRDELAAAQQHLQ--ASEQRVH 419
++ L ++S+ +KQ + Q + EN R+EL AQQ L+ AS + H
Sbjct: 45 VSRLQLQIESLSKQKQHFQEQFKISKNENNKYREELNKAQQQLELLASSREQH 97
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 484 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 522
>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1254
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Frame = +1
Query: 526 KREDPMVELFPDDDHDDNRNNKSDVADAADALRPA------SERRVTRFRAACASSTTWF 687
+R+D + F DDD DD+ ++ D D DAL + ++ C + TTW
Sbjct: 1177 ERDDYCYKGFGDDDDDDDDDDDDDDDDDDDALNEEIIISQYPSSIIATWQTFCLTVTTWH 1236
Query: 688 I 690
+
Sbjct: 1237 L 1237
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 155 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 193
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 505 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 543
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 786 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 824
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 239 SILDWGSSGNDGSGISPSVRR-GREAKT--PHAGSQAVP 346
++LDW ++ G G SP+ R GR KT P AGS P
Sbjct: 595 ALLDWRNTPTAGIGTSPAQRLFGRRCKTLLPVAGSLLQP 633
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,258,955
Number of Sequences: 59808
Number of extensions: 402654
Number of successful extensions: 2543
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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