Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0853
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 493 VGQ*PSGQGEKKREDPMVELFPDDDHDDNRNNKSDVADAADALRPA 630
           VG+  +G G        V    +DD DD  ++  D  +AA+  +PA
Sbjct: 369 VGRNGAGVGAMNANGEAVGEVDEDDDDDGDDDDDDDVEAANG-KPA 413


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 668 QAPQPGSYSTRSQGP 712
           QAPQ GS    SQGP
Sbjct: 32  QAPQRGSPPNPSQGP 46


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 378 AAQQHLQASEQRV 416
           A QQHLQA EQ +
Sbjct: 190 AQQQHLQAHEQHM 202


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 550 LFPDDDHDDNRNNKSDVADAADALRPASE 636
           L P+     + NN+  +   +D  RPAS+
Sbjct: 862 LIPEQTSISHENNQPTMNKCSDRKRPASQ 890


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 236  LSILDWGSSGNDGSGISPSVRRGREAKTPHAGSQAVPRER 355
            LSI   GS   D +  S  + R    +  H G Q   R+R
Sbjct: 1401 LSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDR 1440


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 483 ISLSYLRMEAMNSKC 439
           IS+SY   E +N+KC
Sbjct: 341 ISVSYPSTETLNTKC 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,657
Number of Sequences: 438
Number of extensions: 3508
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)