Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0852
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    28   1.2  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   2.1  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   4.8  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   6.3  

>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 24  EPSSRCCRMNKNHQHRWTCLGFVRLKCLPHTKADSYCAPQ 143
           E  SRC  +N      W  L    LK   HTK  ++ A Q
Sbjct: 576 EAFSRCLSINPEDGESWNNLASAMLKAKDHTKEQAWHAMQ 615


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -3

Query: 135 HNNCPPSCEVDTSVGQIPNTSTCVDGFCSFCSNE 34
           HN+ PP  +  ++  ++PNT++  +  C   +++
Sbjct: 758 HNDAPPKAKPISAPSELPNTTSVAEAKCQTVTDD 791


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 541 CSDVIGNALGNSLTAPRQAWSFLGTFSPL*GFSKIMLLTSVHLLEGA 401
           C  V   A+GN +      W  +GT++ L GF    +L +V+  E +
Sbjct: 402 CVFVAWIAIGNVMHWDSNWWLIIGTYTGLVGFLDGFVLRNVYFRESS 448


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 108 PHTKADSYCAPQPRPVPVLPSRTGQIRXHHFQ 203
           P  K +S+C   P P+  +PS T  IR H F+
Sbjct: 303 PWLKKNSFCLYLPIPLTSIPS-TPSIRSHVFK 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,527
Number of Sequences: 5004
Number of extensions: 46076
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)