Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0852
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0933 - 7199375-7199402,7199497-7199614,7199705-7199783,720...    29   2.8  
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562...    28   4.9  
01_06_0803 - 32100502-32101425                                         28   6.5  
06_03_1317 - 29275262-29276424,29278476-29279352                       27   8.5  
03_04_0216 + 18695292-18696139,18696217-18696339,18697027-186972...    27   8.5  
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    27   8.5  

>06_01_0933 -
           7199375-7199402,7199497-7199614,7199705-7199783,
           7200641-7200842,7200940-7200975,7201912-7202096
          Length = 215

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 369 KLTLTGKGKXVAPSSKCTDV-NSIIFENPHNGEKVPKNDH 485
           KLTLTGK K + P S   D+    +F      E  PKN H
Sbjct: 135 KLTLTGKLKLIDPQSSEADLAKEALFTKHPEMEGWPKNHH 174


>06_01_0750 +
           5624983-5625173,5626229-5626291,5626421-5626967,
           5627075-5627226,5627317-5627533
          Length = 389

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 451 GFSKIMLLTSVHLLEGATXFPLPVKVNLV*TLALAPFS-PMEKGL 320
           GF+ + +++   L  G   F L V  NLV T+ +APF+  +E+G+
Sbjct: 22  GFAGMYIVSVASLKRGMNHFVLVVYRNLVATVLMAPFALLLERGV 66


>01_06_0803 - 32100502-32101425
          Length = 307

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 471 PKNDHACLGAVKELPRALPITSEQTQH 551
           P  DH C+G    LP A+P+      H
Sbjct: 120 PPQDHLCMGHHHHLPSAMPLMHHHGHH 146


>06_03_1317 - 29275262-29276424,29278476-29279352
          Length = 679

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 3   ANR*TLKEPSSRCCRMNKNHQHRWT--CLGFVRLKCLPH 113
           A+R  +KE + R   + K HQH WT   +     +CL H
Sbjct: 625 ADRPAMKEVAERLGGLRKLHQHPWTQDAVELEEARCLLH 663


>03_04_0216 +
           18695292-18696139,18696217-18696339,18697027-18697222,
           18697361-18697519
          Length = 441

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +3

Query: 309 EYLYKPFSIGENGARAKVHTKLTLTGKGKXVAPSSKCTDVNSIIFENPHNGEKVPKNDHA 488
           + L  PF         K+ T   ++ K    A  + CT +   + E+  NG++  + DH 
Sbjct: 346 DILVGPFMQNSVDLHGKISTHKGVSEKAVGSADPTVCTWLRHWLLESSANGQRA-REDHG 404

Query: 489 CLGAVKELPR 518
             GA+  L R
Sbjct: 405 HDGALSNLMR 414


>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
            5890540-5890710,5890840-5891007,5891139-5891234,
            5891777-5891839,5891949-5892114,5892207-5892274,
            5892646-5892789,5893111-5893176,5893329-5893520,
            5894567-5894657,5895241-5895329,5895521-5895583,
            5895698-5895823,5895902-5895991,5896059-5896181,
            5896503-5896619,5896704-5896904,5897643-5897723,
            5897897-5897977,5898083-5898184,5898264-5898488,
            5898571-5898726,5898798-5899010,5899306-5899455,
            5900082-5900204,5900299-5900364,5900555-5900620,
            5900686-5900817,5900891-5900965,5901355-5901438,
            5901516-5901668,5901741-5901806,5902044-5902205,
            5902272-5902388,5902495-5902566,5902702-5902761,
            5902869-5902985,5904131-5904430,5904518-5904622,
            5905710-5905775,5905853-5906297,5906399-5906567,
            5906684-5906736,5906819-5906925
          Length = 1981

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = -1

Query: 233  ISLTPAL-GLTLEMMXSDL-PCSRWE-HRDRSRLRCTITVRLRVR*TLQSDKSQTRPPVL 63
            +S  PAL GL+ E +   L P S  E ++D     C + V+L+++     DK Q+RPP+L
Sbjct: 1832 VSTIPALLGLSREELHRLLQPFSASELYQDLQHFPC-VDVKLKLQ---NEDKDQSRPPIL 1887

Query: 62   MV 57
             +
Sbjct: 1888 SI 1889


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,550
Number of Sequences: 37544
Number of extensions: 349866
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)