Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0852
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      31   0.93 
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)                    29   3.7  
SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7)               29   3.7  
SB_56917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)    28   6.5  
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)                      28   6.5  
SB_47315| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)              27   8.6  
SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 82  WDLSD*SVYLTRRRTVIVHRSRDLSR 159
           WDL D +  +TR++ +++HRS ++ +
Sbjct: 274 WDLDDNTPLITRKKKIVIHRSLEIDK 299


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 423  DVNSIIFENPHNGEKVPKNDHACLGAVKELPRALPITSEQTQHRVFAQ 566
            D NSI  +N + GEK+ KND     A++ L  ++ IT+ + Q ++  Q
Sbjct: 1587 DANSIFIQNLNQGEKITKNDIKL--ALECLSPSIAITNPEQQIQIHYQ 1632


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 138 PQPRPVPVLPSRTGQIRXHHFQRQ 209
           PQP P+P +PS T  +R H  ++Q
Sbjct: 449 PQPYPLPAIPSATKALRGHVVRQQ 472


>SB_5283| Best HMM Match : Ank (HMM E-Value=3.1e-09)
          Length = 481

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 462 EKVPKNDHACLGAVKELPRALPITSEQTQHR 554
           +K+ K  H+C  A+KE+P A   T+++ Q +
Sbjct: 443 DKLRKRLHSCASAMKEIPSATATTNDKGQKK 473


>SB_59127| Best HMM Match : ATP-synt_F6 (HMM E-Value=2.7)
          Length = 479

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 103 VYLTRRRTVIVHRSRDLSR 159
           VYL R R V VH SRD+SR
Sbjct: 206 VYLYRERRVAVHDSRDISR 224


>SB_56917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 92  PTEVSTSHEGGQLLCTAAATCPGAPIENRANPXSSFPTSILMPASRI 232
           P  V    +GG+L+ TA +  PG P+   + P +S    +  P S++
Sbjct: 114 PAWVQNQVDGGKLVMTAMSAPPGTPVS--SIPSASVSPMVTTPISKV 158


>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 92  PTEVSTSHEGGQLLCTAAATCPGAPIENRANPXSSFPTSILMPASRI 232
           P  V    +GG+L+ TA +  PG P+   + P +S    +  P S++
Sbjct: 387 PAWVQNQVDGGKLVMTAMSAPPGTPVS--SIPSASVSPMVTTPISKV 431


>SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)
          Length = 700

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
 Frame = +3

Query: 105 LPHTKADSYCAPQPRPVPVLPSRTGQIRXH--------HFQRQS*CRRQGYASPSVDANV 260
           +PH  +  Y A +  P P +P    ++R H        HF +Q    R+G  +PS     
Sbjct: 129 MPHRTSTKYPAVENIPFPDVPPEV-RLRTHTQQLKSGTHFSKQWQVPRRGEYTPSRRTAK 187

Query: 261 ESKVINGVPEKVA-ATEEYLY--KPFSIGENGARAK 359
           ++K  N  P  ++  +E Y +  +P +   +GA  K
Sbjct: 188 DTKNTNTTPSGISNVSEAYFHQRQPLAGRNDGAWTK 223


>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
          Length = 927

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 327 FSIGENGARAKVHTKLT--LTGKGKXVAPSSKCTDVNSIIFENP 452
           F     G   +VH+K    LTG G  V+P S+ T+  S  + NP
Sbjct: 742 FPPSSRGPGHEVHSKYGRHLTGIGNPVSPHSRMTEKRSSDYSNP 785


>SB_47315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 246 VDANVESKVINGVPEKVAATEEYLYKPFSIG-ENGARAKVHTKLTLTGKGKXVAPSSKCT 422
           + AN+ +K   G P +V   ++     F++      R KV  +L    + K   PS+ C+
Sbjct: 9   ISANIGTKAGTGPPLEVDGIDKLDDTSFALYLSKMTRGKVLERLDKKLRNKHTNPSNSCS 68

Query: 423 DVNSIIFENP 452
             + ++ E P
Sbjct: 69  PGDPLVLERP 78


>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 105 DTSVGQIPNTSTCVDGFCSFCSNEMMALLMFNDW 4
           D  V + P+T  CV+ F S  +   ++LL+   W
Sbjct: 520 DDDVDEAPSTRRCVEHFTSLTALSTVSLLICGSW 553


>SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)
          Length = 436

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 237 SPSVDANVESKVINGVPEKVAATEEYLYKPFSIGEN----GARAKVHTKLTLTGKGKXVA 404
           SPSVD  ++ +V       V+A +    +PFS+  +      +AKV   + + GK     
Sbjct: 82  SPSVDLELDFRVGTPSNNPVSARDTGQERPFSLASSQKVASIKAKVDLNVVMQGKSIDGD 141

Query: 405 PSSKCTDVNS 434
             SK + V S
Sbjct: 142 RMSKASSVQS 151


>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 RSRDLSRCSHREQGKSXIIISNVNPNAGVKDMQ 237
           R RD+   SH + G   + + +V P+A ++ MQ
Sbjct: 172 RLRDIEMMSHSKPGTHEVKVISVEPDASLRTMQ 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,490
Number of Sequences: 59808
Number of extensions: 374994
Number of successful extensions: 1055
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)