Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0852
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.42 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   0.98 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 276 NGVPEKVAATEEYLYKPFSIGENGARAKVHTKLTL 380
           N +PEK A    Y + PFS G      + +  L L
Sbjct: 464 NFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLKL 498


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 226 KDMQVLQSTXM*SPRLLTVYQRRWLPLKN----IFTS 324
           + + V + T   SP LL +   RW PL++    IFTS
Sbjct: 105 RGLGVFERTEPLSPHLLNLEVERWRPLRSRLSPIFTS 141


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 441 FENPH--NGEKVPKNDHACLGAVKELP 515
           F++ H  N EK   +   CLG+V +LP
Sbjct: 27  FDSLHAGNAEKTLCSGQVCLGSVMQLP 53


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 315 LYKPFSIGENGARAKVHTKLTLTGKGKXVAPSSKCTDVNS 434
           +YKPF I E  + +  + + T+        P+S+ T V +
Sbjct: 857 MYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKA 896


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 123 DSYCAPQPRPVPVLPSRTG 179
           DS   P+P P P  PS +G
Sbjct: 334 DSDTPPKPAPPPPPPSSSG 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 375  TLTGKGKXVAPSSKCTDVN 431
            TLT  G  +AP+ +  DVN
Sbjct: 1551 TLTVTGGTIAPARELPDVN 1569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,710
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)