Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0852
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    29   3.1  
At1g20100.1 68414.m02515 expressed protein                             27   7.1  
At1g65910.1 68414.m07479 no apical meristem (NAM) family protein...    27   9.4  

>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
           SP|Q61493 DNA polymerase zeta catalytic subunit (EC
           2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
           DNA polymerase family B
          Length = 1890

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 192 HHFQRQS*CRRQGYASPSVDANVESKVINGVPEKVAAT 305
           HH++RQS C  +G A+ S   N + K+ N + +  + T
Sbjct: 269 HHYRRQSLCELEGDATSSDILNQQFKMYNSLSQAQSDT 306


>At1g20100.1 68414.m02515 expressed protein
          Length = 285

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 435 IIFENPHNGEKVPKNDHACLGAVKELPRALP 527
           I+F+ P   E VP+ D  C  +  + P  LP
Sbjct: 130 IVFKKPKEAEAVPQEDPVCSTSGTQRPSELP 160


>At1g65910.1 68414.m07479 no apical meristem (NAM) family protein
           similar to jasmonic acid 2 GI:6175246 from [Lycopersicon
           esculentum]; similar to NAC2 (GI:6456751) {Arabidopsis
           thaliana}
          Length = 631

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +3

Query: 444 ENPHNGEKVPKNDH-----ACLGAVK--ELPRALPITSEQTQHRVFAQ 566
           EN HN   + KNDH     +C   VK  E+   L +T+ Q  +  F Q
Sbjct: 432 ENEHNENLLDKNDHETTSSSCFEVVKKVEVSHGLFVTTRQVTNTFFQQ 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,569,555
Number of Sequences: 28952
Number of extensions: 261128
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)