Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0850
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 178 6e-46
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 4e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 94 1e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 89 4e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 2e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 8e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 34 0.015
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.14
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.55
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 29 0.73
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 27 1.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.9
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 6.8
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 6.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 178 bits (433), Expect = 6e-46
Identities = 79/87 (90%), Positives = 81/87 (93%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 427
G +DSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 428 APLNPKANREKMTQIXFETFNTPAMYV 508
APLNPK+NREKMTQI FETFN PA YV
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYV 134
Score = 101 bits (241), Expect = 1e-22
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQ+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
Score = 54.8 bits (126), Expect = 1e-08
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHNRAHXTXDYALP 624
IQAVLSLYASGRTTGIVLDSGDGV H YALP
Sbjct: 136 IQAVLSLYASGRTTGIVLDSGDGVTHT-VPIYEGYALP 172
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.9 bits (228), Expect = 4e-21
Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = +2
Query: 254 EDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEA 430
+D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 54 KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP 113
Query: 431 PLNPKANREKMTQIXFETFNTPAMYVPSKP 520
PL N+EK+ + +ET N PA+ +P
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 55.6 bits (128), Expect = 6e-09
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTL 263
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM Q+ +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHN 591
+Q VL+LYAS RTTGIVL+ GDG+ H+
Sbjct: 141 LQPVLALYASARTTGIVLECGDGLTHS 167
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 94.3 bits (224), Expect = 1e-20
Identities = 38/92 (41%), Positives = 63/92 (68%)
Frame = +2
Query: 233 RDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 412
+ G +D VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 413 VLLTEAPLNPKANREKMTQIXFETFNTPAMYV 508
+LLTE P+NP ANREKM + FE + +YV
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYV 134
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 117 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 221
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXH 588
IQAVLSLYA G ++G+V+DSGDGV H
Sbjct: 136 IQAVLSLYAQGLSSGVVVDSGDGVTH 161
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 89.4 bits (212), Expect = 4e-19
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 433
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 434 LNPKANREKMTQIXFETFNTPAMYV 508
LNP NRE +I FE+FN +Y+
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYI 157
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 212
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 8/34 (23%)
Frame = +1
Query: 511 IQAVLSLYASGRT--------TGIVLDSGDGVXH 588
+QAVL+L AS + TG V+DSGDGV H
Sbjct: 159 VQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Frame = +2
Query: 233 RDGRYGTEDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 409
RD + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 410 PVLLTEAPLNPKANREKMTQIXFETFNTPAM 502
P+ +TE NP R MT++ FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 224
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 58.4 bits (135), Expect = 8e-10
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 299 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIXF 478
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + F
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 479 ETFNTPAMYV 508
E+ PA Y+
Sbjct: 123 ESLRCPATYL 132
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.2 bits (117), Expect = 1e-07
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 DSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 430
+ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 50 NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109
Query: 431 PLNPKANREKMTQIXFETFNTPAMYV 508
NP++ R+++ + FE + PA Y+
Sbjct: 110 SWNPQSVRQQIMEAAFEQLHVPAFYL 135
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 215
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.3 bits (75), Expect = 0.015
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +2
Query: 314 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIXFE 481
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 482 TFNTPAMYVPSKP 520
P + +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 374 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIXFETFNTP 496
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 0.55
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -2
Query: 346 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLCPIPTITP*WRGLPTIEGNTARGASSPAK 167
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 166 PALHIP 149
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 28.7 bits (61), Expect = 0.73
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +2
Query: 377 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIXFETFNTPAMYVPSKPCSRCTRPVVPPV 556
Y+EL +A +E P L P PK + + N A + KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENNIASF--QKPSSKATRPYIP-- 76
Query: 557 SCWTPATVSXTTVPI 601
+T T S +PI
Sbjct: 77 -SYTRLTYSVPPLPI 90
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 284 SVPHLLHKSPLSHTDHHALMAGPSHDRGEH 195
+VP L P HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 244 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 110
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 250 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 158
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 428 APLNPKANREKMTQIXFETFNTPAMYVPSKPCSRCTRPVVPPVSCW 565
APLNP+ ++ Q TF + Y+P P P PV W
Sbjct: 254 APLNPRKGFCRILQRSLITFLSAVCYLPYNP-----HPTSKPVVSW 294
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 276 SSPT*ESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 115
SSP+ +SS S G RSR + H + RP + S + P +L
Sbjct: 61 SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 416 LLTEAPLNPKANREKMTQIXFETFN 490
+L APL+ + +KM ++ FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,075
Number of Sequences: 5004
Number of extensions: 59333
Number of successful extensions: 167
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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