Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0850
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 2e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 2e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 186 2e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 186 2e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 2e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 5e-19
SB_54| Best HMM Match : Actin (HMM E-Value=0) 75 5e-14
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 60 1e-09
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 59 3e-09
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 55 4e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 4e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 7e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.083
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.58
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 30 1.3
SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_42341| Best HMM Match : DUF701 (HMM E-Value=3) 29 4.1
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 29 4.1
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 28 5.4
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 28 5.4
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.4
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 28 5.4
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11) 27 9.5
SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 83/87 (95%), Positives = 85/87 (97%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 427
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 428 APLNPKANREKMTQIXFETFNTPAMYV 508
APLNPKANREKMTQI FETFN+PAMYV
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYV 135
Score = 104 bits (250), Expect = 5e-23
Identities = 47/51 (92%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/38 (73%), Positives = 29/38 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHNRAHXTXDYALP 624
IQAVLSLYASGRTTGIV+DSGDGV H YALP
Sbjct: 137 IQAVLSLYASGRTTGIVMDSGDGVTHT-VPIYEGYALP 173
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 186 bits (452), Expect = 2e-47
Identities = 83/87 (95%), Positives = 85/87 (97%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 427
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 428 APLNPKANREKMTQIXFETFNTPAMYV 508
APLNPKANREKMTQI FETFN+PAMYV
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYV 134
Score = 101 bits (243), Expect = 4e-22
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/38 (73%), Positives = 29/38 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHNRAHXTXDYALP 624
IQAVLSLYASGRTTGIV+DSGDGV H YALP
Sbjct: 136 IQAVLSLYASGRTTGIVMDSGDGVTHT-VPIYEGYALP 172
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 186 bits (452), Expect = 2e-47
Identities = 83/87 (95%), Positives = 85/87 (97%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 427
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 428 APLNPKANREKMTQIXFETFNTPAMYV 508
APLNPKANREKMTQI FETFN+PAMYV
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYV 134
Score = 103 bits (246), Expect = 2e-22
Identities = 46/49 (93%), Positives = 49/49 (100%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/38 (73%), Positives = 29/38 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHNRAHXTXDYALP 624
IQAVLSLYASGRTTGIV+DSGDGV H YALP
Sbjct: 136 IQAVLSLYASGRTTGIVMDSGDGVTHT-VPIYEGYALP 172
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 83/87 (95%), Positives = 85/87 (97%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 427
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 428 APLNPKANREKMTQIXFETFNTPAMYV 508
APLNPKANREKMTQI FETFN+PAMYV
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYV 135
Score = 109 bits (261), Expect = 2e-24
Identities = 48/51 (94%), Positives = 51/51 (100%)
Frame = +3
Query: 105 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/38 (73%), Positives = 29/38 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHNRAHXTXDYALP 624
IQAVLSLYASGRTTGIV+DSGDGV H YALP
Sbjct: 137 IQAVLSLYASGRTTGIVMDSGDGVTHT-VPIYEGYALP 173
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 186 bits (452), Expect = 2e-47
Identities = 83/87 (95%), Positives = 85/87 (97%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 427
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 428 APLNPKANREKMTQIXFETFNTPAMYV 508
APLNPKANREKMTQI FETFN+PAMYV
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYV 135
Score = 104 bits (250), Expect = 5e-23
Identities = 45/51 (88%), Positives = 50/51 (98%)
Frame = +3
Query: 105 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXH 588
IQAVLSLYASGRTTGIV+DSGDGV H
Sbjct: 137 IQAVLSLYASGRTTGIVMDSGDGVSH 162
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 103 bits (246), Expect = 2e-22
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +3
Query: 111 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQR 257
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 85.4 bits (202), Expect = 3e-17
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +2
Query: 248 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 376
G +DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/38 (73%), Positives = 29/38 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHNRAHXTXDYALP 624
IQAVLSLYASGRTTGIV+DSGDGV H YALP
Sbjct: 99 IQAVLSLYASGRTTGIVMDSGDGVTHT-VPIYEGYALP 135
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 449 NREKMTQIXFETFNTPAMYV 508
N + M +I FETFN+PAMYV
Sbjct: 78 NWDDMEKIMFETFNSPAMYV 97
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 91.5 bits (217), Expect = 5e-19
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = +2
Query: 227 SGRDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 403
S + G +D VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 404 EHPVLLTEAPLNPKANREKMTQIXFETFNTPAMYV 508
VLLTE PLNP NREKM ++ FE + +Y+
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYI 138
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 123 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 221
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXH 588
IQAVL+LYA G TG+V+DSGDGV H
Sbjct: 140 IQAVLTLYAQGLLTGVVIDSGDGVTH 165
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 74.9 bits (176), Expect = 5e-14
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +2
Query: 356 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIXFETFNTPAMYV 508
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+ FE+FN P MYV
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYV 2179
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 129 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 230
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXH 588
+QAV++LYASGRTTG V D GDGV H
Sbjct: 2181 VQAVMALYASGRTTGTVFDCGDGVSH 2206
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 404 EHPVLLTEAPLNPKANREKMTQIXFETFNTPAMYV 508
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFI 160
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHN 591
+QAVLSLYA+GRTTG+VLD+GDGV H+
Sbjct: 162 MQAVLSLYATGRTTGVVLDAGDGVSHS 188
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 114 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 230
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 58.8 bits (136), Expect = 3e-09
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +2
Query: 314 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIXFETFNT 493
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++ FE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 494 PAMYV 508
PA ++
Sbjct: 63 PAFFL 67
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +1
Query: 517 AVLSLYASGRTTGIVLDSG 573
+VL+ +A+GR+ G+V+DSG
Sbjct: 71 SVLTAFANGRSNGLVIDSG 89
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/38 (73%), Positives = 29/38 (76%)
Frame = +1
Query: 511 IQAVLSLYASGRTTGIVLDSGDGVXHNRAHXTXDYALP 624
IQAVLSLYASGRTTG+V DSGDGV HN YALP
Sbjct: 15 IQAVLSLYASGRTTGVVFDSGDGVSHN-VPIYEGYALP 51
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Frame = +2
Query: 257 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 421
D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 99 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 245
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 514 QAVLSLYASGRTTGIVLDSG 573
Q LSLYASG T G+ L SG
Sbjct: 767 QLSLSLYASGMTLGVCLSSG 786
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 227 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 111
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 263 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 385
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 117 EVAALVVDNGSGMCKAGFAGDDAPRAV 197
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = +2
Query: 239 GRYGTEDS---YVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 400
GR G DS VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 401 EEHPVLLTEAPLNPKANRE 457
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 482 TFNTPAMYVPSKPCSRCTRPVVPPVSCWTPATVSXTT 592
T TP + P+KP + P P + TP T + TT
Sbjct: 113 TTPTPTAHTPTKPTPKTPTPTTPTPTAHTPTTPTPTT 149
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 509 PSKPCSRCTRPVVPP 553
P++PCS CT+P +PP
Sbjct: 220 PTEPCSLCTKPALPP 234
>SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = +2
Query: 410 PVLLTEAPLNPKANREKMTQIXFETFNTPAMYVPSKPCSRCTRPVV---PPVSCWTPATV 580
P L+T PL +T NTP + + P T P+V PP+ TP V
Sbjct: 34 PSLVTTTPLLVTTTPSLVTTTPLLVTNTPPLDTTTLPLVTITPPLVITAPPLVTTTPPLV 93
Query: 581 SXTTVPIXRXITHF 622
TT P+ T F
Sbjct: 94 --TTTPLLVTTTPF 105
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 275 HLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGL 159
H++ K+ +SH +HH ++ + +HG R + SCE+ L
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQL 503
>SB_42341| Best HMM Match : DUF701 (HMM E-Value=3)
Length = 651
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/80 (22%), Positives = 30/80 (37%)
Frame = +2
Query: 335 TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIXFETFNTPAMYVPS 514
TN+ + +W H + P V L + + P N E + ++ F +
Sbjct: 496 TNFSESRCVWLHKEEQQTTHRPSRQVVTLVDYAVCPFVNHEVLVKVHL-LFEERCAVLVG 554
Query: 515 KPCSRCTRPVVPPVSCWTPA 574
C R RP P+ +PA
Sbjct: 555 GSCRRGCRPRRAPLVALSPA 574
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 202 GNTARGASSPAKPALHIPEPLSTT 131
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 293 LFCSVPHLLHKSPLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 150
L C ++ LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 217 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 107
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_15831| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 153
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 224 PSGRDGRYGTEDSYVGDEAQSKRG 295
P GRDG G +D+ GD+A + G
Sbjct: 39 PDGRDGTDGGDDADEGDDADGRDG 62
>SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 446 ANREKMTQIXFETFNTPAMYVPSKPCSRCTRPVVPPVSCWT 568
A++ K FE F T A++ +P +R VVPP+S T
Sbjct: 2 ADQIKSNLEAFEHFGTLAIHAGQEPEKWTSRAVVPPISLST 42
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,223,547
Number of Sequences: 59808
Number of extensions: 536849
Number of successful extensions: 3401
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3396
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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