Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0849
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    73   4e-14
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    45   9e-06
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    44   2e-05
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    43   4e-05
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    41   1e-04
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    38   0.001
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    35   0.012
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    30   0.35 
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    27   3.3  
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    26   5.8  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   7.6  

>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 33/34 (97%), Positives = 34/34 (100%)
 Frame = +1

Query: 139 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
           MF+TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLG
Sbjct: 1   MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 34



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
 Frame = +2

Query: 236 LGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG--SDGRLQXP* 409
           LGSTAIG+ T   VVL VEKR+TS LME H   +K+ E+D HI CA+ G  +D R     
Sbjct: 33  LGSTAIGVKTKDAVVLGVEKRLTSPLMESHS-VEKLFEIDSHIGCAISGLTADARTIIEH 91

Query: 410 LKRXXLNVRTTGLCTMKRMSVXSCAQGGFHLAIQFWRQ*R*LXEQPCQRXFGVAVMVFRH 589
            +    N R T     +   + S  Q    LA++F  +     E+   R FGVA+++   
Sbjct: 92  ARVQTQNHRFT---YDEPQGIESTTQSICDLALRF-GEGEDGEERIMSRPFGVALLI-AG 146

Query: 590 XXEKXPQL 613
             E  PQL
Sbjct: 147 IDEHGPQL 154


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 19/50 (38%), Positives = 31/50 (62%)
 Frame = +2

Query: 233 NLGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
           N    A+GI    G+VLA EK++TS L+E  + ++K+  +  ++ CAV G
Sbjct: 29  NHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAG 78



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +1

Query: 145 LTRSEYDRGVNTFSPEGRLFQVEYAIEAI 231
           ++RS YD     FSPEGRL+QVEYA+EAI
Sbjct: 1   MSRS-YDSRTTIFSPEGRLYQVEYALEAI 28


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +1

Query: 151 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
           R++YD    T+SP+GRL QVEYA+EAIK G
Sbjct: 3   RNQYDGDATTWSPQGRLHQVEYALEAIKQG 32



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 239 GSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG--SDGRLQXP*L 412
           GS  +G+ +    VL   KR    L       KK++ +D HI  A+ G   D R+    +
Sbjct: 32  GSATVGLVSKTHAVLVALKRNAEELSSYQ---KKLIRIDDHIGIAIAGLAPDARVLSNYM 88

Query: 413 KRXXLNVRT 439
           K+  L+ +T
Sbjct: 89  KQEALSSKT 97


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = +2

Query: 242 STAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
           ST IGI    GV+LA+EK +TS L++P   + +I  VDRHI  A  G
Sbjct: 34  STCIGIKCEDGVILALEKVVTSKLLKPR-VNNRIGSVDRHIGIATTG 79



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEAIKLGLHC 249
           YD G+  FSP+GRLFQ EYA +A++    C
Sbjct: 8   YDLGL-FFSPDGRLFQAEYAYKAVENASTC 36


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +1

Query: 154 SEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
           S YDR ++ FSP+GRL QVEY  EA++ G
Sbjct: 2   SGYDRALSVFSPDGRLLQVEYGQEAVRRG 30


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEA 228
           +DR +  FSPEGRL+QVEYA +A
Sbjct: 7   FDRTITVFSPEGRLYQVEYAFKA 29


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 157 EYDRGVNTFSPEGRLFQVEYAIEAIKLGL 243
           +Y   + TFSP G+L Q+EYA+ A+  G+
Sbjct: 4   KYAFSLTTFSPNGKLVQIEYALNAVNAGV 32



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 233 NLGSTAIGICTSXGVVLAVEKRITSTL 313
           N G T++GI  + GVVLA EK+ TS L
Sbjct: 29  NAGVTSVGIKATDGVVLATEKKPTSEL 55


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 499  LSYSVLETVTMIXGTAMSTXIWGCCNGFQALXXKGPPTCFIW 624
            ++Y  L T  M   + +    W CCNG +AL  +G  +  +W
Sbjct: 1519 MAYKPLHTPLMAVASDLE---WKCCNGLEALVRQGLASFHLW 1557


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 224 KLSNLGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFGS 385
           K ++ G+T +G+     +VL  + R T+  +      KK+  +  +I CA  G+
Sbjct: 30  KATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGT 83


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +2

Query: 233 NLGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
           N G+T +      G+V+ V+ R ++  +      KK++E++ ++   + G
Sbjct: 59  NHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAG 108


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -1

Query: 212 STWNSLPSGLNVLTPRSYSERVRNILLLRYSR 117
           ++WN++PSG N L+  +  ++ ++  L  +S+
Sbjct: 521 ASWNNVPSGDNTLSTEALQDKKKSEELTAHSK 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,766
Number of Sequences: 5004
Number of extensions: 52016
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)