Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0849
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  48   5e-06
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            37   0.017
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 34/94 (36%), Positives = 41/94 (43%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEAIKLGLHCNWHLYFGXSCFGRGEEDNFNFDGTPRPIEK 339
           YDR +  FSP+G LFQVEYA EA+K G              G   +        PR + K
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQ-EPRTVRK 63

Query: 340 DC*SRSTHRLRRFRV*WPTPGXLVEKXXVECQNH 441
            C +   H L  F         LV K  VECQ+H
Sbjct: 64  IC-TLDDHVLMAFAGLTADARILVNKARVECQSH 96



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +2

Query: 239 GSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG--SDGRL 397
           GSTA+G+  +  VVL VE++  + L EP    +KI  +D H+  A  G  +D R+
Sbjct: 31  GSTAVGVRGNNIVVLGVERKAVAKLQEPR-TVRKICTLDDHVLMAFAGLTADARI 84


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +2

Query: 245 TAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
           TAI I    GVV  VEK + S L E +  +K+I  +D HI  A+ G
Sbjct: 165 TAIAIRCKDGVVFGVEKLVLSKLYE-YGANKRIFHIDTHIGMAIAG 209



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEAIK 234
           YD   + FSP+GR+FQVEYA +A++
Sbjct: 137 YDLSASQFSPDGRVFQVEYANKAVE 161


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 148 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGLH--CNWHLYFG 270
           T + +DR +  FSPEGRL+QV  +   ++   +   NW   FG
Sbjct: 5   TSAGFDRHITIFSPEGRLYQVADSRSQVQRARYEAANWKYKFG 47


>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 209 TWNSLPSGLNVLTPRSYSE 153
           +W SLPS +NV+  RSY +
Sbjct: 329 SWESLPSDMNVMVERSYCQ 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,792
Number of Sequences: 59808
Number of extensions: 393136
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)