Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0849
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...    75   4e-14
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...    43   2e-04
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    40   0.002
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    36   0.027
Z92825-7|CAB07317.1|  487|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81041-15|CAB02792.1|  487|Caenorhabditis elegans Hypothetical p...    27   9.3  
AL132846-5|CAJ76972.1|  377|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 49/106 (46%), Positives = 57/106 (53%)
 Frame = +1

Query: 139 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGLHCNWHLYFGXSCFGRGEEDNFNFDG 318
           MFLTRSEYDRGVNTFSPEGRLFQVEYAIEA+KLG   +  +          E+ + +   
Sbjct: 1   MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLG-STSIGIKTSEGVLLAAEKRSTSKLM 59

Query: 319 TPRPIEKDC*SRSTHRLRRFRV*WPTPGXLVEKXXVECQNHWFVYN 456
               IEK       H    F         LVE+  +E QN WF YN
Sbjct: 60  VNDAIEKIS-KVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYN 104



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
 Frame = +2

Query: 236 LGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG--SDGRLQXP* 409
           LGST+IGI TS GV+LA EKR TS LM  +D  +KI +VD+HI     G  +D R     
Sbjct: 33  LGSTSIGIKTSEGVLLAAEKRSTSKLM-VNDAIEKISKVDQHIGVTFAGLIADSRTL--- 88

Query: 410 LKRXXLNVRTTGLCTMKRMSVXSCAQGGFHLAIQFWRQ*R*LXEQPCQRXFGVAVM 577
           ++R  +  +       +++ V    Q   +LA+QF        +    R FGVA++
Sbjct: 89  VERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDD---DVKASMSRPFGVAML 141


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +1

Query: 154 SEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
           + YDR +  FSP+G LFQVEYA EA+K G
Sbjct: 2   NRYDRAITIFSPDGHLFQVEYAQEAVKKG 30



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 239 GSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
           GSTA+G+     +V+ VEK+    L +     +KI  +D H+  A  G
Sbjct: 30  GSTAVGVRGKDCIVIGVEKKSIPALQDDR-TIRKIHMIDDHVMLAFAG 76


>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = +1

Query: 151 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
           R++YD  V  +SP+GRL QVEYA+EA+K G
Sbjct: 3   RNQYDGDVTVWSPQGRLHQVEYAVEAMKQG 32


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEAI 231
           YD     FSPEGRL+QVEYA+EAI
Sbjct: 5   YDSRTTIFSPEGRLYQVEYAMEAI 28



 Score = 34.3 bits (75), Expect = 0.081
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = +2

Query: 227 LSNLGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
           +S+ G T +GI +S G+V+A E++    L++    ++K+  +  +I+C V G
Sbjct: 28  ISHAG-TCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAG 78


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEAI 231
           +DR +  FSPEGR++QVEYA +AI
Sbjct: 9   FDRHITIFSPEGRVYQVEYAFKAI 32



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = +2

Query: 227 LSNLGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
           +++   TA+ +  +   V+AV+KR+  +L+   D    + ++ + + C   G
Sbjct: 32  INSTNLTAVAVKGADAAVIAVQKRVPDSLIVA-DTVTSVYQISQSVGCCAIG 82


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEAI 231
           YD   +TFSP+GR+FQVEYA +A+
Sbjct: 8   YDLAASTFSPDGRIFQVEYAQKAV 31


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 160 YDRGVNTFSPEGRLFQVEYAIEAIKLG 240
           Y   + TFSP G+L Q+EYA+ A+K G
Sbjct: 5   YGFSLTTFSPSGKLMQIEYALNAVKNG 31


>Z92825-7|CAB07317.1|  487|Caenorhabditis elegans Hypothetical
           protein C27A7.6 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 385 RPENGASDVSIYFNNLFRWVVGF 317
           RP NG+ DVS+  N +F++V  F
Sbjct: 70  RPANGSIDVSLVTNQIFQFVAVF 92


>Z81041-15|CAB02792.1|  487|Caenorhabditis elegans Hypothetical
           protein C27A7.6 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 385 RPENGASDVSIYFNNLFRWVVGF 317
           RP NG+ DVS+  N +F++V  F
Sbjct: 70  RPANGSIDVSLVTNQIFQFVAVF 92


>AL132846-5|CAJ76972.1|  377|Caenorhabditis elegans Hypothetical
           protein Y43D4A.3a protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 385 RPENGASDVSIYFNNLFRWVVGF 317
           RP NG+ DVS+  N +F++V  F
Sbjct: 57  RPANGSIDVSLVTNQIFQFVAVF 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,257,615
Number of Sequences: 27780
Number of extensions: 299214
Number of successful extensions: 598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)