Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0849
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.2  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 230 IASMAYSTWNSL-PSGLNVLTPRSYSERV 147
           ++S  +  W  L  SG+   TPRS+S RV
Sbjct: 610 LSSAVWFAWGVLLNSGIGEGTPRSFSARV 638


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 348 STIFFDGSWGSIKVEVILFSTAKTTPSEVQMPIAVE 241
           ST++ +GS+G   +EV    T + T   V +  AV+
Sbjct: 142 STVYSEGSYGEYGIEVF---TREATERNVCIAAAVK 174


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 348 STIFFDGSWGSIKVEVILFSTAKTTPSEVQMPIAVE 241
           ST++ +GS+G   +EV    T + T   V +  AV+
Sbjct: 232 STVYSEGSYGEYGIEVF---TREATERNVCIAAAVK 264


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 311 LMEPHDPSKKIVEVDRHIACAVFGSDGRLQ 400
           +M+P  P  KI  V   IA   F  +GRL+
Sbjct: 29  MMKPTLPGYKIECVGDDIAWMKFDKEGRLR 58


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 213 ICHRSYQTWAPLQLAFVLRXELFW 284
           I H   QT+AP  L  +L    FW
Sbjct: 199 IGHHLIQTFAPSTLVVMLSWFSFW 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,386
Number of Sequences: 438
Number of extensions: 3631
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)