Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0849
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 73 2e-13
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 73 2e-13
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 50 1e-06
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 47 1e-05
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 47 1e-05
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 45 4e-05
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 45 4e-05
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 44 9e-05
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 44 9e-05
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 42 3e-04
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 40 0.002
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 33 0.13
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 33 0.13
At3g30230.1 68416.m03820 myosin heavy chain-related similar to M... 31 0.93
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 29 2.8
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 28 6.5
At4g32295.1 68417.m04595 expressed protein 27 8.6
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 139 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLG
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLG 34
Score = 70.1 bits (164), Expect = 1e-12
Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Frame = +2
Query: 236 LGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG--SDGRLQXP* 409
LGSTAIG+ T GVVLAVEKRITS L+EP +KI+E+D HI CA+ G +D R
Sbjct: 33 LGSTAIGVKTKEGVVLAVEKRITSPLLEP-SSVEKIMEIDDHIGCAMSGLIADARTL--- 88
Query: 410 LKRXXLNVRTTGLCTMKRMSVXSCAQGGFHLAIQFWRQ*R*LXEQPCQRXFGVAVMVFRH 589
++ + + + M+V S Q LA++F E+ R FGV++++ H
Sbjct: 89 VEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG----EEESMSRPFGVSLLIAGH 144
Query: 590 XXEKXPQLVSYGXPXVQFF 646
E P L Y P F+
Sbjct: 145 -DENGPSLY-YTDPSGTFW 161
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 139 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLG
Sbjct: 1 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLG 34
Score = 70.1 bits (164), Expect = 1e-12
Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Frame = +2
Query: 236 LGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG--SDGRLQXP* 409
LGSTAIG+ T GVVLAVEKRITS L+EP +KI+E+D HI CA+ G +D R
Sbjct: 33 LGSTAIGVKTKEGVVLAVEKRITSPLLEP-SSVEKIMEIDDHIGCAMSGLIADARTL--- 88
Query: 410 LKRXXLNVRTTGLCTMKRMSVXSCAQGGFHLAIQFWRQ*R*LXEQPCQRXFGVAVMVFRH 589
++ + + + M+V S Q LA++F E+ R FGV++++ H
Sbjct: 89 VEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG----EEESMSRPFGVSLLIAGH 144
Query: 590 XXEKXPQLVSYGXPXVQFF 646
E P L Y P F+
Sbjct: 145 -DENGPSLY-YTDPSGTFW 161
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +2
Query: 227 LSNLGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG 382
+ N GS AIGI + GVVL EK++TS L++ ++K+ ++D H+ACAV G
Sbjct: 28 IGNAGS-AIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAG 78
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 160 YDRGVNTFSPEGRLFQVEYAIEAI 231
YD FSPEGRL+QVEYA+EAI
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAI 28
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +1
Query: 151 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
R++YD V T+SP GRLFQVEYA+EA+K G
Sbjct: 3 RNQYDTDVTTWSPTGRLFQVEYAMEAVKQG 32
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +1
Query: 151 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
R++YD V T+SP GRLFQVEYA+EA+K G
Sbjct: 3 RNQYDTDVTTWSPTGRLFQVEYAMEAVKQG 32
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +1
Query: 154 SEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
+ YDR + FSP+G LFQVEYA+EA++ G
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKG 30
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 239 GSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHI--ACAVFGSDGRL 397
G+ A+G+ + VVLAVEK+ T L + ++KIV +D HI ACA +D R+
Sbjct: 30 GNAAVGVRGTDTVVLAVEKKSTPKLQDSRS-ARKIVSLDNHIALACAGLKADARV 83
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +1
Query: 154 SEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
+ YDR + FSP+G LFQVEYA+EA++ G
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKG 30
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 239 GSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHI--ACAVFGSDGRL 397
G+ A+G+ + VVLAVEK+ T L + ++KIV +D HI ACA +D R+
Sbjct: 30 GNAAVGVRGTDTVVLAVEKKSTPKLQDSRS-ARKIVSLDNHIALACAGLKADARV 83
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 160 YDRGVNTFSPEGRLFQVEYAIEAIK 234
YDR + FSPEGRLFQVEYA +A+K
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVK 33
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 160 YDRGVNTFSPEGRLFQVEYAIEAIK 234
YDR + FSPEGRLFQVEYA +A+K
Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVK 33
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +2
Query: 272 GVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFGSD 388
GVVL EK++TS L++ +K+ ++D H+ACAV G D
Sbjct: 324 GVVLVGEKKVTSKLLQTSSSMEKMYKIDDHVACAVAGWD 362
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 160 YDRGVNTFSPEGRLFQVEYAIEAI 231
YD V TFSP+GR+FQ+EYA +A+
Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAV 31
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 245 TAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFG--SDGR 394
T +GI G+V+ VEK I S +M P +++I V RH AV G +DGR
Sbjct: 36 TVVGIKCKDGIVMGVEKLIASKMMLP-GSNRRIHSVHRHAGMAVAGLAADGR 86
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 154 SEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
S+Y + TFSP G+L Q+E+A+ A+ G
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSG 32
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 239 GSTAIGICTSXGVVLAVEKRITSTLME 319
G T++GI S GVV+A EK++ S L++
Sbjct: 32 GQTSLGIKASNGVVIATEKKLPSILVD 58
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 154 SEYDRGVNTFSPEGRLFQVEYAIEAIKLG 240
S+Y + TFSP G+L Q+E+A+ A+ G
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSG 32
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 239 GSTAIGICTSXGVVLAVEKRITSTLME 319
G T++GI S GVV+A EK++ S L++
Sbjct: 32 GQTSLGIKASNGVVIATEKKLPSILVD 58
>At3g30230.1 68416.m03820 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 527
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 315 WNPTTHRKRLLK*IDTSLAPFSGLMADSRXLS 410
W PT H++ LL +S FS L AD R LS
Sbjct: 283 WRPTIHKRFLLHAYHSSQGKFSSLEADLRSLS 314
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 233 NLGSTAIGICTSXGVVLAVEKRITSTLMEPHDPSKKIVEVDRHIACAVFGS 385
++G+T IG+ + GVVL + R ++ + + S KI ++ ++ GS
Sbjct: 10 SMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGS 60
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -2
Query: 487 LST*XYTHTLHCTQTSGSDIQLGPFQLRXLESAIRPENGASDVSIYFNNLFRWVVGF 317
LST ++ +H S S + L L + N + IY NN RW+ F
Sbjct: 389 LSTVNHSRAVHSAYFSPSGLSLATTSLDNYIGVLSGANFENTCMIYHNNTSRWISKF 445
>At4g32295.1 68417.m04595 expressed protein
Length = 238
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -3
Query: 315 IKVEVILFSTAKTTPSEVQMPIAVEPKFDSFYGIFHLEQPS----FRAECVDAAIILGTC 148
++ E I++S A + + M ++ D+ I L++ + F C++AA+ LG
Sbjct: 59 LRAEEIMYSKANSEAEYMDMKTLLDRTNDAINTIIRLDETTETGEFLQPCIEAALHLGCT 118
Query: 147 EKHFTITVL*MTPRLY 100
+ + + + PR Y
Sbjct: 119 PRRASRSQRNINPRCY 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,334,096
Number of Sequences: 28952
Number of extensions: 277633
Number of successful extensions: 617
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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