Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0847
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.29
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 2.7
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 4.7
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 4.7
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 4.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 4.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.1
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 8.1
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.29
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 81 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 245
+PT S TP S TTA+S T PL N +T T A S+ +S NS T
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNSTTAT 466
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 81 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRT 194
+PT S TP S TTA+S T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 247 DELMEYAYQLWMQGSKDIVRECFPVEFTLIFAENNIKLMYKRDGLALTLRDDSNNDGRLA 426
DE+ EY Y+ M + + CF LI A IK+ + +A +L D+ LA
Sbjct: 997 DEISEYLYRRLMDEESSVKKTCFMTLAFLILA-GQIKVKGQLGIMARSLEDEDARISDLA 1055
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 459 SQLEVRSSVGEQQGLLQIVNTQRNQYLTLSVKTTPTQNHMAYGVNSVEGFKA 614
S L + S++ + GL +V+T +Q+L + P A+GVNS+ KA
Sbjct: 797 SALNLTSALLQSFGLY-LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKA 847
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 78 YMPTEPQSPTPNSKTIFTTASSLPITTMP 164
YMP P +P PN+ IF + P+T +P
Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 498 LVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFGENKCEL 322
L +LP +++PAD ++ + G +VVA S T VH ++ V C+L
Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLT---VHGISYVVDTGYCKL 788
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 86 NGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNS 256
+ TS + + LE V E++KQ+ K+SE++ + NKL+ N ++ S
Sbjct: 642 DSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIES 698
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 113 LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNN 244
LE+D + ++ + A+ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 6.1
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 65 FVASLYANGTSVSDSKLEDDLYNSI-LVADYDNAVEKSKQIYEDKKSEV-ITNVVNKLIR 238
F+ L ++ +SV D E D + I +D++ ++ + E T+ ++
Sbjct: 248 FLLGLISSDSSVDDHDNEQDDVDLIGWECFFDDSSDELNTLSHQADDEGDTTDEETPELQ 307
Query: 239 NNKMNSWSTPTSSGCKAPRI 298
NNK+ + STP S + PRI
Sbjct: 308 NNKLLNLSTPKKSFGQTPRI 327
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 181 DLR-GQEERSHHKCRKQTHTKQQDELM 258
D+R GQEE + HT QQDEL+
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDELI 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,619
Number of Sequences: 5004
Number of extensions: 47649
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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